Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 615 a.a., cold-shock dead-box protein A from Agrobacterium fabrum C58

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 81/376 (21%), Positives = 143/376 (38%), Gaps = 40/376 (10%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q+  +      ++ L+ + TGSGKT++  IA+   L       G  ++   L I+P 
Sbjct: 24  TPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALATTLLSENTRFGQASAPLALAIAPT 83

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +   L            E   E  G+  A   G      + + L++  HI+  T
Sbjct: 84  RELAMQVKREL------------EWLYEFAGVSIASCVGGMDIRNERRALERGAHIVVGT 131

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  L   +        L +++ V++DE    AD    +     LE + E +  +   +  
Sbjct: 132 PGRLCDHIKRNALD--LSSIRAVVLDE----ADEMLDLGFREDLEFILEESPDDRRTLMF 185

Query: 196 SATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEKL 255
           SATV     +A     Y  +  +        + V      LL    D  N     +  + 
Sbjct: 186 SATVP--RSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINAL--RF 241

Query: 256 YEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLELE 315
           YE          N ++F +TR     +   L  R        +     G L++ +R    
Sbjct: 242 YEA--------RNAIVFCSTRAAVNHLTARLNNR------GFSVVALSGELTQNERTHAL 287

Query: 316 EKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGRI 375
           + ++ G  +    +     GID+P ++LV+    P + +T+L R GR G    K     +
Sbjct: 288 QAMRDGRARVCVATDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIV 347

Query: 376 IALDR----DELLECA 387
           + + +    + LLE A
Sbjct: 348 VPVSQRRKAERLLEGA 363