Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 45.1 bits (105), Expect = 6e-10
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   VEIIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPV 57
           + +++D+E C  CG C + CP     +    +   Y  DV+ C +CK C+ ACPV
Sbjct: 119 INLLIDEEVCVSCGTCENACPVDAISH---NNTGLYEIDVNLCVSCKNCLKACPV 170



 Score = 42.4 bits (98), Expect = 4e-09
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 6   IVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVNLK 65
           IVD+EKC GC  CY  C   P      K+      +   C  C +C  ACPV AI   LK
Sbjct: 277 IVDEEKCIGCRICYRSC-NVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDY-LK 334

Query: 66  RHILEK--QVHKLKEKFQ 81
               E      K++++F+
Sbjct: 335 TETSEDLYSKRKIRDEFE 352



 Score = 41.2 bits (95), Expect = 9e-09
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 3   VEIIVD-KEKCTGCGKCYDKCPKGPRIYKKDKDGKYY--AFDVSDCHNCKICVAACPVGA 59
           + +I D  EKC  C  C + CP      + +++ K     FD   C NC  CV +CP   
Sbjct: 39  IPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNV 98

Query: 60  IQVNLKR 66
           +++   R
Sbjct: 99  LEMGTLR 105



 Score = 33.9 bits (76), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 12  CTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVNLKRHILEK 71
           C GCG C D CP    + +           V+ C     C+  CP  AI++ +   I ++
Sbjct: 221 CIGCGNCVDVCPGSIDLER---------LKVTSCIKSGKCLEVCPTTAIRIGVPEKITKR 271



 Score = 30.4 bits (67), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 5   IIVDKEKCTGC---GKCYDKCPKGP-RIYKKDKDGKY----YAFDVSDCHNCKICVAACP 56
           I +++ K T C   GKC + CP    RI   +K  K     Y  D   C  C+IC  +C 
Sbjct: 235 IDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCN 294

Query: 57  V 57
           V
Sbjct: 295 V 295