Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 48.1 bits (113), Expect = 8e-11
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 3   VEIIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQV 62
           V+  VD + C GCG C DKCP+   +       +  A     C  C +C AACPV AI++
Sbjct: 194 VKFSVDSDLCIGCGDCTDKCPRDLIVL-----NEMVAVPPKGCPACGLCKAACPVDAIEL 248



 Score = 42.4 bits (98), Expect = 4e-09
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 4   EIIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVN 63
           E I   E C GCG C  +CP G        +G+    D   C  C IC   CP  AI V 
Sbjct: 127 EPIAVTEDCVGCGVCISECPVG----ALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVA 182

Query: 64  LKR 66
            K+
Sbjct: 183 GKK 185



 Score = 41.6 bits (96), Expect = 7e-09
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 5   IIVDKEKCTGCGKCYDKC---------PKGPRIYKKDKDGKYYAFDVSDCHNCKICVAAC 55
           I+ D+EKC  CG C  KC         PKG  +  + K  K   F +  C  C  CV +C
Sbjct: 263 IVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKM--CIRCGACVQSC 320

Query: 56  PVGAIQVNLKRHILEKQVHKLKE 78
           P  A+++        K +H  KE
Sbjct: 321 PNDALRIG-------KIIHNGKE 336



 Score = 41.2 bits (95), Expect = 9e-09
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 12  CTGCGKCYDKCPKG----PRIYKKDKDG----KYYAFDVSDCHNCKICVAACPVGAIQVN 63
           C GC KC D CP        + +  K      K       DC  C +C++ CPVGA+ + 
Sbjct: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153

Query: 64  LKRHILEK 71
            ++ +++K
Sbjct: 154 GEKAVVDK 161



 Score = 38.1 bits (87), Expect = 8e-08
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 6   IVDKEKCTGCGKCYDKCP------KGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGA 59
           +VDK+ C  C  C   CP       G +  K+DK+   ++ D   C  C  C   CP   
Sbjct: 158 VVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDL 217

Query: 60  IQVN 63
           I +N
Sbjct: 218 IVLN 221



 Score = 35.0 bits (79), Expect = 7e-07
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 12  CTGCGKCYDKCPKGP-RIYKKDKDGKYYA---FDVSDCHNCKICVAACPVGAIQVNLK 65
           C  CG C   CP    RI K   +GK Y    F  + C +C  C+  CP   +++  K
Sbjct: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGK 367



 Score = 30.0 bits (66), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 12 CTGCGKCYDKCPKGP----RIYKKDKDGKYYAFDVSDCHNCKICVAACP 56
          C  CG C + CP        I    K  K  A+  + C  C  CV  CP
Sbjct: 32 CQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCP 80



 Score = 28.9 bits (63), Expect = 5e-05
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 41 DVSDCHNCKICVAACPVGAIQVN 63
          +  DC+ CK C  +CP  A+++N
Sbjct: 5  NTEDCYMCKACENSCPTEALKLN 27



 Score = 26.6 bits (57), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 12  CTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAAC 55
           C  CGKC + CP          +     F    C  C  C+ AC
Sbjct: 347 CDSCGKCIETCPYDMLKLTGKSEKPLEGF----CVMCLKCIEAC 386



 Score = 25.4 bits (54), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 5  IIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQV 62
          I ++ E C  C  C + CP         +  K   F V  C  C  CV  CP  A+ +
Sbjct: 2  IKINTEDCYMCKACENSCP--------TEALKLNPFKV--CQLCGNCVNVCPNDALNL 49