Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 557 a.a., 30S ribosomal protein S1 from Rhodanobacter sp000427505 FW510-R12

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 37/77 (48%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE L EG ++KGTV+N+ D+GAF+D+G   DGL HI+++A + ++HP +V++VGD +DV 
Sbjct: 187 LERLTEGAVVKGTVKNLTDYGAFVDLG-GIDGLLHITDMAWKRVRHPSEVVNVGDELDVR 245

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 246 VLKYDKERNRVSLGLKQ 262



 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMDI 698
           G  L G V N+ D+G F++I    +GL H+SE+   ++ + +P  V+ VGD  +VMV+D+
Sbjct: 278 GSRLFGKVSNVTDYGCFVEIEPGVEGLVHVSEMDWTNKNV-NPAKVVQVGDETEVMVLDV 336

Query: 699 DFDKKRVSLSIKRAK 713
           D +++R+SL IK+ +
Sbjct: 337 DEERRRISLGIKQTR 351



 Score = 45.8 bits (107), Expect = 6e-09
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 639 KEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPL-DVISVGDIVDVMVMD 697
           K+G  + G +++I DFG FI +    DGL H+S+I+ +     L      GD ++ +V+ 
Sbjct: 363 KKGDKVSGQIKSITDFGVFIGLDGGIDGLVHLSDISWQMSGEDLVRNFKKGDEIEAVVLA 422

Query: 698 IDFDKKRVSLSIKR 711
           +D +++R+SL I++
Sbjct: 423 VDPERERISLGIQQ 436



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDF 700
           G I+ GTV+ +   GA ID+G   +G    ++IA   I      + VGD V+     +D 
Sbjct: 452 GSIVTGTVKEVDAKGAVIDLGEGVEGYLRANDIAKERIDDATQHLKVGDKVEAKFTGMDR 511

Query: 701 DKKRVSLSIK 710
             ++++LSI+
Sbjct: 512 KGRQLALSIR 521