Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 789 a.a., Protein YhgF from Xanthobacter sp. DMC5

 Score =  575 bits (1483), Expect = e-168
 Identities = 315/725 (43%), Positives = 463/725 (63%), Gaps = 22/725 (3%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I + +  E N +  QV   V LIDEG T+PFI+RYRKE TG LDD  LR   +RL+YLR 
Sbjct: 12  IARLIAAEINARPAQVTAAVSLIDEGATVPFIARYRKEVTGGLDDTQLRTLEERLSYLRE 71

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           LE ++A ++  ID QGKL+ EL+ KIE +    ELED+Y P++PKR+T+A IA  KGL P
Sbjct: 72  LESRRAAVLSSIDGQGKLSDELRGKIEAATTKAELEDLYLPYKPKRRTKAEIAREKGLGP 131

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L+E IL      P E  A  F+N +  V  ++ A+ GA+DI+ E  ++NA+    +R + 
Sbjct: 132 LAEAILADRSVAPAERAA-AFLNEQ--VADIKAALDGARDILVETFAENAELVGRLRGHL 188

Query: 183 FSEGIISVKAKNVDEKS--VYEMYYEYSEAINKIPGHRILAINRGESEKILQVKL----D 236
            +  ++  K     E++   +  Y+++SE     P HR+LA+ RG +E++L + L    D
Sbjct: 189 KANAMLKAKVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEEMLTLDLVVDED 248

Query: 237 A-----PVEFIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAEN 291
           A     P E I    +   +   +     L +    +++  ++  +  E+   + E+AE 
Sbjct: 249 ATTPVKPAERIVAEAYDIPLANGAPADGFLLEVARWAWRVKLSLHLTVELMGEMRERAEE 308

Query: 292 GAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNK 351
            AI VF++NLK LLL  P  ++  +G DP  RTG K+A+VD TGK++  + VYP +P N 
Sbjct: 309 EAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATSTVYPFQPRND 368

Query: 352 VTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDV-----YYVIVNEAG 406
           V     ++  LI +++++++AIGNGTASRE++ + ++++  +  D        V+V+EAG
Sbjct: 369 VQGAMAELAHLIRRHNVELIAIGNGTASRETDKLAADMIAALPPDASGKKPIKVVVSEAG 428

Query: 407 ASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKL 466
           ASVYSAS   + E P+ DV IR A+SIARRLQDPLAELVKI+PK+IGVGQYQHD++Q +L
Sbjct: 429 ASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQARL 488

Query: 467 SESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKV 526
           +++L AVVE +VN+VGVDLNTAS SLL  VSG+   +A+ IVA+R   G F++RKELLKV
Sbjct: 489 AKTLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNSVGAFKTRKELLKV 548

Query: 527 SKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKIS 586
           S+LG + FE  AGFLRIP+G    D + VHPE+Y++A+ ++       +D+++   D  +
Sbjct: 549 SRLGPRTFELAAGFLRIPDGAEPLDASAVHPEAYEVAKKIVAACG---RDVRQIMGDTAA 605

Query: 587 EKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKG 646
            K    +       G+PT+ DI+ ELEKPGRDPR           V E+ DLK GM+L+G
Sbjct: 606 LKALDPRAFVDERFGLPTVRDILTELEKPGRDPRPAFKTATFAEGVHEMSDLKPGMVLEG 665

Query: 647 TVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVS 706
           TV N+  FGAF+DIGVH DGL H+S +ADRF+K P +V+  GD+V V V+++D  +KR++
Sbjct: 666 TVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRIA 725

Query: 707 LSIKR 711
           LS+++
Sbjct: 726 LSMRK 730