Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

 Score =  584 bits (1506), Expect = e-171
 Identities = 323/720 (44%), Positives = 464/720 (64%), Gaps = 17/720 (2%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I  ++ +E  ++  QVE  V L+DEG+T+PFI+RYRKE TGSLDD  LR   +RL YLR 
Sbjct: 4   INSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRE 63

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           L++++  I+  I+EQGKLT +L++ I+ ++  T LED+Y P++ KR+T+  IA   GL  
Sbjct: 64  LDERRISILASIEEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGD 123

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L++ +       P  E A  F++ E  V  V+ A+ GAK I+ E  +++A   + +R   
Sbjct: 124 LADGLFNDPSLTPETEAAR-FIDAEKGVADVKAALEGAKYILMERFAEDASLLEKLRNYL 182

Query: 183 FSEGIISVK--AKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDA--- 237
             E I+S +  A   +E + +  Y+E+ E +  +P HR LAI RG +E IL   L     
Sbjct: 183 KQEAILSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVGDE 242

Query: 238 ------PVEFIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAEN 291
                 P E +    F  I  +N    + L + V  ++K  +   +E ++   L + AE 
Sbjct: 243 LPGTMHPCEGMIGQQF-GIQNQNRPADKWLGEVVRWTWKVKLYTHLETDLLGELRDGAET 301

Query: 292 GAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNK 351
            AI VF+ NL  LLL  P   +  LG DP  RTGCK+A+VD TGK+LD   VYP  PHNK
Sbjct: 302 EAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHNK 361

Query: 352 VTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEV-VNDVYYVIVNEAGASVY 410
             +T   +  L  K+ +D++AIGNGTASRE++ + +E++K+     +  V+V+EAGASVY
Sbjct: 362 WDQTLAILAALCAKHAVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGASVY 421

Query: 411 SASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESL 470
           SASEL S EFP+ DV IR A+SIARRLQDPLAELVKIDPKSIGVGQYQHD++Q KL+  L
Sbjct: 422 SASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGL 481

Query: 471 GAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLG 530
            AVVE  VN+VGVD+NTASV+LL  +SG+N  +A+NIV +R ENG F++R  L KV++LG
Sbjct: 482 DAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVNHRDENGAFKTRAALKKVARLG 541

Query: 531 KKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVD 590
           +K FEQ AGFLR+  G N  D++ VHPE+Y + + +  E +  I+ +         +++D
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDA--AFLKRLD 599

Query: 591 IEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRN 650
            +K  ++   G+PT+ DI++ELEKPGRDPR +      +  V +L+DL+ GMIL+G V N
Sbjct: 600 PKKYTDE-TFGVPTITDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLELGMILEGVVTN 658

Query: 651 IVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
           + +FGAF+DIGVH DGL HIS ++++FIK P + +  GD+V V VM++D  +KRV LS++
Sbjct: 659 VTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMR 718