Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 562 a.a., SSU ribosomal protein S1p from Variovorax sp. SCN45

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 32/77 (41%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           +E LKEG +++G V+NI ++GAF+D+G   DGL HI+++A R ++HP +V+  G  +   
Sbjct: 186 METLKEGAVVRGVVKNITEYGAFVDLG-GIDGLLHITDMAWRRVRHPSEVVQAGQEITAK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           ++  D +K RVSL +K+
Sbjct: 245 ILKFDTEKNRVSLGLKQ 261



 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 3/72 (4%)

Query: 644 LKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKH--PLDVISVGDIVDVMVMDIDFD 701
           L G V NI D+GAF+++    +GL H+SE+ D   K+  P  ++S+GD V+VMV++ID D
Sbjct: 280 LFGKVTNIADYGAFVELEPGIEGLVHVSEM-DWTNKNIAPNKIVSLGDEVEVMVLEIDED 338

Query: 702 KKRVSLSIKRAK 713
           K+R+SL +K+ K
Sbjct: 339 KRRISLGMKQCK 350



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 636 EDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVM 694
           ++ K G  +KG +++I DFG F+ +    DGL H+S+++ +   +  +     G  V+ +
Sbjct: 359 QNTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGETAVRNYKKGQEVEAI 418

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+ +D D++R+SL IK+
Sbjct: 419 VLAVDVDRERISLGIKQ 435



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDID 699
           +G I+ G V+ +   GA ID+G    G    SEI+   ++   +V+  GD V  +V+++D
Sbjct: 450 KGQIVTGKVKTVDARGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVTAIVVNVD 509

Query: 700 FDKKRVSLSIKR 711
              + + LSIK+
Sbjct: 510 RKTRNIQLSIKQ 521