Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 570 a.a., SSU ribosomal protein S1p from Sphingobium sp. HT1-2

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 31/77 (40%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           ++ L EG I++G V+NI D+GAF+D+G   DGL H+++++ + I HP ++I++GD V V 
Sbjct: 194 IQTLAEGQIIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRINHPNEMINIGDTVRVQ 252

Query: 695 VMDIDFDKKRVSLSIKR 711
           ++ I+ + +R+SL +K+
Sbjct: 253 IIRINRETQRISLGMKQ 269



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDID 699
           G  L G V NI ++GAF+++    +GL H+SE++  +   HP  ++S    V+V+V+++D
Sbjct: 285 GAKLSGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVIVLEVD 344

Query: 700 FDKKRVSLSIKRAK 713
            +K+R+SL +K+A+
Sbjct: 345 PEKRRISLGLKQAQ 358



 Score = 48.9 bits (115), Expect = 7e-10
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFI-KHPLDVISVGDIVDVMVMDID 699
           G  ++G V+N  +FG FI +    DG+ H+S+IA     +  L +   G+ V  +V+DID
Sbjct: 372 GSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLDID 431

Query: 700 FDKKRVSLSIKR 711
            +K+R+SL +K+
Sbjct: 432 VEKERISLGMKQ 443



 Score = 35.4 bits (80), Expect = 8e-06
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDID 699
           EG ++KGTV  I +  A ID+G+  +G   + E A    K  L    VGD V+V V  ++
Sbjct: 28  EGRVVKGTVTGIENDMALIDVGLKSEGRVPLREFAAPGQKADL---KVGDEVEVYVDRVE 84

Query: 700 FDKKRVSLSIKRAK 713
                  LS  RA+
Sbjct: 85  NAHGEAMLSRDRAR 98