Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 576 a.a., 30S ribosomal protein S1 from Pseudomonas putida KT2440

 Score = 79.7 bits (195), Expect = 4e-19
 Identities = 38/77 (49%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + IKHP ++++VGD VDV 
Sbjct: 204 LETLQEGQQVKGIVKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEIVNVGDEVDVR 262

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 263 VLKFDRERNRVSLGLKQ 279



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697
           EG  ++  V N+ D+G F ++    +GL H+SE+   ++ I HP  V+ VGD V+VMV+D
Sbjct: 294 EGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNI-HPSKVVQVGDEVEVMVLD 352

Query: 698 IDFDKKRVSLSIKRAK 713
           ID +++R+SL IK+ K
Sbjct: 353 IDEERRRISLGIKQCK 368



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 35/151 (23%), Positives = 75/151 (49%), Gaps = 27/151 (17%)

Query: 567 LNELNISIKDIKEKKIDKISEKV-----DIEKLAEKLDCGIPTLEDIIKELEKPGRDPRE 621
           ++E++ + K+I   K+ ++ ++V     DI++   ++  GI   +           +P E
Sbjct: 324 VSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS----------NPWE 373

Query: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKH 680
           D      + D +            GT+++I DFG FI +    DGL H+S+I+ +   + 
Sbjct: 374 DFSGQFNKGDKIT-----------GTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEE 422

Query: 681 PLDVISVGDIVDVMVMDIDFDKKRVSLSIKR 711
            +     GD ++ +++ +D +++R+SL IK+
Sbjct: 423 AVRRFKKGDELETVILSVDPERERISLGIKQ 453



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 23/133 (17%)

Query: 578 KEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELED 637
           K  +++ +   VD E+  E++  GI  LED          DP          S+ + + D
Sbjct: 429 KGDELETVILSVDPER--ERISLGIKQLED----------DPF---------SNFVAVND 467

Query: 638 LKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMD 697
             +G I+KG V+ +   GA + +    +     SEI+   ++   +V+  G+ ++  ++ 
Sbjct: 468 --KGAIVKGIVKEVDAKGAIVTLADDIEATLKASEISRDRVEDARNVLKEGEEIEAKIIS 525

Query: 698 IDFDKKRVSLSIK 710
           +D   + +SLSIK
Sbjct: 526 VDRKSRVISLSIK 538