Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

 Score =  586 bits (1510), Expect = e-171
 Identities = 322/719 (44%), Positives = 463/719 (64%), Gaps = 15/719 (2%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I  ++ +E  ++  QVE  V L+DEG+T+PFI+RYRKE TGSLDD  LR   +RL YLR 
Sbjct: 91  INSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRE 150

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           L++++A I+  I+EQGKLT EL ++I+ ++  T LED+Y P++ KR+T+  IA   GL  
Sbjct: 151 LDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGE 210

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L++ +       P  E A  FVN E  V  V+ A+ GAK I+ E  +++A     +R   
Sbjct: 211 LADGLFNDPTLAPESEAAR-FVNAEKGVADVKAALEGAKYILMERFAEDAALLDKLRSYL 269

Query: 183 FSEGIISVK--AKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE 240
             E ++S +  A   +E + +  Y+ + E +   P HR LAI RG +E +L V L    E
Sbjct: 270 KQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVLSVSLKVGEE 329

Query: 241 F---IHD---WIFKNIILENSQ--TSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENG 292
               +H     I  ++ +EN      + L + V  ++K  +   +E ++   L + AE  
Sbjct: 330 LPGTLHPCELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDSAEGE 389

Query: 293 AIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKV 352
           AI VF+ NL  LLL  P   +  LG+DP  RTGCKIA+VD TGK+LD T VYP  P N  
Sbjct: 390 AINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKNDW 449

Query: 353 TETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEV-VNDVYYVIVNEAGASVYS 411
             T   +  L  K+ ++++AIGNGTASRES+ +V+E++K+     +  ++V+EAGASVYS
Sbjct: 450 DRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKYPALKITKIMVSEAGASVYS 509

Query: 412 ASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLG 471
           ASEL + EFP+ DV IR A+SIARRLQDPLAELVKIDPKSIGVGQYQHD++Q KL+  L 
Sbjct: 510 ASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGLD 569

Query: 472 AVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGK 531
           AVVE  VN+VGVD+NTASV+LL  +SG+N  +A+NIVA+R  NG F +R  L KVS+LG+
Sbjct: 570 AVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRLGE 629

Query: 532 KAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDI 591
           K FEQ AGFLR+  G N  D + VHPE+Y + + +  + +  I+ +         +++D 
Sbjct: 630 KTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGD--SSFLKRLDP 687

Query: 592 EKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNI 651
           +K  ++   G+PT+ DI++EL+KPGRDPR +      +  V +L+DL+ GMIL+G V N+
Sbjct: 688 KKFTDE-TFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNV 746

Query: 652 VDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
            +FGAF+DIGVH DGL HIS ++++F+K P + +  GD+V V VM++D  +KRV LS++
Sbjct: 747 TNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMR 805