Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 627 a.a., 30S ribosomal protein S1 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 33/77 (42%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L +L++G +L+G ++N+ +FG FID+G   DGL HI++I+   I HP +V+ +   V+++
Sbjct: 206 LNNLEKGQVLEGVIKNMTNFGVFIDLG-GVDGLLHITDISWGRINHPEEVLQLDQKVNIV 264

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+D D DKKR+SL +K+
Sbjct: 265 VLDFDEDKKRISLGMKQ 281



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 590 DIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVR 649
           D  K  ++++  + TL+   +++    +   ED   P  + DVL    +  G    G VR
Sbjct: 340 DFIKQGDEVEAVVLTLDRQERKMSLGIKQLTED---PWTKEDVLTKYAI--GTKHTGIVR 394

Query: 650 NIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLS 708
           N+ +FG F+++    DGL H+S+++  + IKHP + + VG+ +DV+V+++D   +R++L 
Sbjct: 395 NLTNFGLFLELEEGVDGLVHVSDLSWTKKIKHPSEFVKVGENLDVVVLELDVPNRRLALG 454

Query: 709 IKR 711
            K+
Sbjct: 455 HKQ 457



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 25/76 (32%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 637 DLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMV 695
           +++ G  +KG + N+ D+GAF+++    +GL H+SE++  + +++P D I  GD V+ +V
Sbjct: 293 EIEVGSRVKGKIVNVADYGAFLELMPGVEGLIHVSEMSWSQHLRNPQDFIKQGDEVEAVV 352

Query: 696 MDIDFDKKRVSLSIKR 711
           + +D  ++++SL IK+
Sbjct: 353 LTLDRQERKMSLGIKQ 368



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L  ++E  ++ GTV  + D    ++IG   DGL  ISE  D      +  +  GD V+V 
Sbjct: 38  LTTVQEQEVVTGTVVGVTDRDVILNIGFKSDGLVSISEFRD------MPDLKPGDQVEVF 91

Query: 695 VMDIDFDKKRVSLSIKRAK 713
           + D +    ++ LS K+AK
Sbjct: 92  IEDQEDPNGQLILSRKKAK 110