Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 565 a.a., 30S ribosomal protein S1 from Magnetospirillum magneticum AMB-1

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 35/77 (45%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           +E+LKEG IL+G V+NI D+GAF+D+G   DGL H+++IA + I HP + + +G  V V 
Sbjct: 194 IENLKEGQILEGVVKNITDYGAFVDLG-GVDGLLHVTDIAWKRINHPSEALHIGQTVKVQ 252

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  + + +R+SL IK+
Sbjct: 253 VIRFNSETQRISLGIKQ 269



 Score = 57.0 bits (136), Expect = 2e-12
 Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 646 GTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDIDFDKKR 704
           G V NI D+GAF+++    +GL H+SE++  +   HP  ++S    V+VMV+D+D  K+R
Sbjct: 290 GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDVDPQKRR 349

Query: 705 VSLSIKR 711
           +SL +K+
Sbjct: 350 ISLGLKQ 356



 Score = 53.1 bits (126), Expect = 4e-11
 Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 9/82 (10%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI-----ADRFIKHPLDVISVGD 689
           L+   +G +++G ++NI +FG FI +    DG+ H+S++      ++ I++       GD
Sbjct: 366 LDRFPQGTLVEGEIKNITEFGLFIGLPGDIDGMVHLSDLDWATPGEQAIQN----FKKGD 421

Query: 690 IVDVMVMDIDFDKKRVSLSIKR 711
           +V   V+D+D +K+R+SL IK+
Sbjct: 422 VVKAKVLDVDVEKERISLGIKQ 443



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDID 699
           EG ++ GT+  I    A ID+G+  +G   + E A        D I  GD VDV V   +
Sbjct: 28  EGSVITGTIVEIDGDVAVIDVGLKSEGRVPLKEFAT--AGRAAD-IKAGDQVDVFVERYE 84

Query: 700 FDKKRVSLSIKRAK 713
                V LS ++AK
Sbjct: 85  DRNGEVVLSREKAK 98