Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score =  573 bits (1478), Expect = e-168
 Identities = 319/726 (43%), Positives = 462/726 (63%), Gaps = 22/726 (3%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I  ++  E  +K  QV  TV+++DEG T+PFI+RYRKEAT  LDD  LR   +RL YLR 
Sbjct: 13  ITNRIALELGVKPSQVAATVQMLDEGATVPFIARYRKEATDGLDDTQLRNLEERLGYLRE 72

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           LED++A I++ I+EQGKLT +L  +I +++    LED+Y P++PKR+T+A IA   GL+P
Sbjct: 73  LEDRRAAILRSIEEQGKLTPDLAGQIGEADSKARLEDLYLPYKPKRRTKAQIAREAGLEP 132

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L++ +L      P E+ AE +V+ E  V  V+ A+ GA+ I+ E  +++A+    +R+  
Sbjct: 133 LADALLADPALVP-EQAAEPYVDAEKGVADVKAALDGARQILMERFAEDAELLGNLRDAL 191

Query: 183 FSEGI-ISVKAKNVDEKSV-YEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE 240
           +  G+ IS  A+   E    +  Y++Y EAI  IP HR LA+ RG +E +L +KL  P E
Sbjct: 192 WDGGVLISTVAEGKSEAGAKFSDYFDYREAIKAIPSHRALALFRGRNENVLNLKLLTPDE 251

Query: 241 FIHD--------WIFKNIILENSQTSEI-------LKDTVIDSYKRLIAPSIEREIRNSL 285
                         F+  I       ++       L +TV  +++  I   +E E+ + L
Sbjct: 252 AARPDGTVSQGPGEFEARIARRFSVRDLKRPADSWLAETVRWAWRIKIHLHLELELMSRL 311

Query: 286 TEKAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYP 345
            E AE  AI VF++NL+ LLLQ P   +  +G DP  RTG K+A+ D TGKV++   +YP
Sbjct: 312 REAAEAEAINVFARNLRALLLQAPAGARNCIGLDPGIRTGVKVAVTDATGKVVETATIYP 371

Query: 346 TEPHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVN-DVYYVIVNE 404
            +P N    +   +  L  K+ I +VAIGNGTASRE++ +V +++K   +  +  ++V+E
Sbjct: 372 HQPRNDWQGSVAAIAHLARKHGIKLVAIGNGTASRETDRLVIDVMKRHPDLGLEKLVVSE 431

Query: 405 AGASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQK 464
           AGASVYSASEL + EFP+ DV +R A+SIARRLQDPLAELVKIDPK+IGVGQYQHD++Q 
Sbjct: 432 AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQV 491

Query: 465 KLSESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELL 524
           KL  SL AVVE  VN+VGV++NTAS  LL  V+G++  +A+N+V +R   G F SR+ L 
Sbjct: 492 KLGRSLDAVVEDCVNAVGVEVNTASAPLLARVAGLSPTVARNVVEFRDRFGPFASREALK 551

Query: 525 KVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDK 584
           +V +LG KAFEQ AGFLR+  G N  D++ VHPE+Y + E ++      +K +       
Sbjct: 552 QVERLGAKAFEQAAGFLRVVGGVNPLDSSAVHPEAYPVVERIVKATGRPVKALIGD--SS 609

Query: 585 ISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMIL 644
               +D ++  ++   G PT++DI+KELEKPGRDPR +      +  V  L DLK GMIL
Sbjct: 610 FIRSLDPKEFTDE-RFGEPTVKDILKELEKPGRDPRPEFKTAAFKEGVETLNDLKPGMIL 668

Query: 645 KGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKR 704
           +G V N+ +FGAF+DIGVH DGL HIS +ADRF+K P +V+  GD+V V V+++D  + R
Sbjct: 669 EGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKVLEVDIKRSR 728

Query: 705 VSLSIK 710
           ++LS++
Sbjct: 729 IALSMR 734