Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 776 a.a., RNA-binding transcriptional accessory protein from Serratia liquefaciens MT49

 Score =  587 bits (1512), Expect = e-171
 Identities = 322/714 (45%), Positives = 467/714 (65%), Gaps = 19/714 (2%)

Query: 10  EFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQ 69
           E   +  QV++ ++L+DEGNT+PFI+RYRKE TG LDD  LR+   RL YLR LED++  
Sbjct: 12  ELQARPEQVDSAIRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLGYLRELEDRRQT 71

Query: 70  IIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILK 129
           I+K IDEQGKLT +L   I  ++  TELED+Y P++PKR+TR  IA   GL+PL++ + +
Sbjct: 72  ILKSIDEQGKLTEQLATAITATQSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADTLWQ 131

Query: 130 QILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENTFSEGIIS 189
              ++P E+LAEG+VN +  V  V+ A+ GA+ I+ E  +++A     +R   +    + 
Sbjct: 132 DPQQQP-EQLAEGYVNADKGVADVKAALDGARYILMERFAEDAALLAKVRNYLWKHAHLV 190

Query: 190 VKAKNVDEKS--VYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVEF------ 241
            K     E++   +  Y+++ E I ++P HR LA+ RG +E +LQ+ L+A  +F      
Sbjct: 191 SKVVEGKEEAGAKFRDYFDHHEPIAQVPSHRALAMFRGRNEGVLQLALNADPQFEEAPRE 250

Query: 242 --IHDWIFKNIILE-NSQTSEILKDTVID-SYKRLIAPSIEREIRNSLTEKAENGAIEVF 297
                 I  ++ L  N   ++  +  V++ +++  +   +E E+ +++ E+AE+ AI VF
Sbjct: 251 SQAEQIIISHLDLRLNDAPADAWRKAVVNWTWRIKVLLHLETELMSTVRERAEDEAINVF 310

Query: 298 SKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKK 357
           ++N+  LL+  P   +  +G DP  RTG K+A+VD TGK++    VYP     +  +   
Sbjct: 311 ARNMHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTVYPHT--GQAAKAAA 368

Query: 358 QVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVN-DVYYVIVNEAGASVYSASELG 416
            V  L IK+ +++VAIGNGTASRE+E    ++ ++        VIV+EAGASVYSASEL 
Sbjct: 369 IVAALCIKHKVELVAIGNGTASRETERFYLDLQQQFSEVKAQKVIVSEAGASVYSASELA 428

Query: 417 SDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVES 476
           + EFP  DV +R A+SIARRLQDPLAELVKIDPKSIGVGQYQHD++Q +L++ L +VVE 
Sbjct: 429 ALEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQSQLAKKLDSVVED 488

Query: 477 SVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQ 536
            VN+VGVDLNTASV LL  V+G+   +A+NIV +R ENG+F +R++LLKVS+LG KAFEQ
Sbjct: 489 CVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVTWRDENGRFSNREQLLKVSRLGPKAFEQ 548

Query: 537 CAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAE 596
           CAGFLRI  G N  D + VHPE+Y + E +L   + +++D+        S K   +   E
Sbjct: 549 CAGFLRINHGDNPLDASTVHPETYPVVERILAATHQALQDLMGNPAAVRSLKAS-DFTDE 607

Query: 597 KLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGA 656
           K   G+PT+ DI+KELEKPGRDPR +         V  L DL+ GMIL+G+V N+ +FGA
Sbjct: 608 KF--GVPTVTDILKELEKPGRDPRPEFKTATFAEGVETLNDLQPGMILEGSVTNVTNFGA 665

Query: 657 FIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
           F+DIGVH DGL HIS +AD+F++ P  V+  GDIV V VM++D  +KR++LS++
Sbjct: 666 FVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEVDLQRKRIALSMR 719