Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 776 a.a., Transcriptional accessory protein from Enterobacter asburiae PDN3

 Score =  579 bits (1492), Expect = e-169
 Identities = 322/717 (44%), Positives = 456/717 (63%), Gaps = 39/717 (5%)

Query: 17  QVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQIIKLIDE 76
           QVE  V+L+DEGNT+PFI+RYRKE TG LDD  LR    RL YLR LE+++  I+K I E
Sbjct: 20  QVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLGYLRELEERRQAILKSIGE 79

Query: 77  QGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILKQILEKPI 136
           QGKLT+EL+  I  +   TELED+Y P++PKR+TR  IA   GL+PL++L+  +    P 
Sbjct: 80  QGKLTSELESAINGTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPE 139

Query: 137 EELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENTFSEGII--SVKAKN 194
            E A+ F++ +  V   + A+ GA+ I+ E  +++A     +R+  +    I  +V A  
Sbjct: 140 TEAAK-FIDADKGVADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHIVSTVVAGK 198

Query: 195 VDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVEF------------I 242
            +E + +  Y+++ E I+  P HR LA+ RG +E +LQ+ L+A  +F            I
Sbjct: 199 EEEGAKFRDYFDHHEPISTAPSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESHCEQII 258

Query: 243 HDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKNLK 302
            D +   + L N+      K  V  +++  +   +E E+  ++ E+AE+ AI VF++NL 
Sbjct: 259 IDHL--GLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLH 316

Query: 303 QLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVKEL 362
            LL+  P   +  +G DP  RTG K+A+VD TGK++    +YP     +  +    V  L
Sbjct: 317 DLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHT--GQAAKAAVVVAAL 374

Query: 363 IIKYDIDVVAIGNGTASRESEHIVSEILKEVVN-DVYYVIVNEAGASVYSASELGSDEFP 421
             KY++++VAIGNGTASRE+E    ++ K+        VIV+EAGASVYSASEL + EFP
Sbjct: 375 CEKYNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFP 434

Query: 422 EYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNSV 481
           + DV +R A+SIARRLQDPLAELVKIDPKSIGVGQYQHD++Q +L+  L AVVE  VN+V
Sbjct: 435 DLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAV 494

Query: 482 GVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGFL 541
           GVDLNTASV LL  V+G+   +A+NIVA+R ENG+F++R++LLKVS+LG KAFEQCAGFL
Sbjct: 495 GVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFL 554

Query: 542 RIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDI--------KEKKIDKISEKVDIEK 593
           RI  G N  D + VHPE+Y + E +L     ++KD+          K +D   +K     
Sbjct: 555 RINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGDNSALRNLKAVDFTDDKF---- 610

Query: 594 LAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVD 653
                  G+PT+ DIIKELEKPGRDPR +         V  + DL  GM+L+G V N+ +
Sbjct: 611 -------GVPTVTDIIKELEKPGRDPRPEFKTATFADGVETMNDLLPGMVLEGAVTNVTN 663

Query: 654 FGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
           FGAF+DIGVH DGL HIS +AD+F++ P  V+  GDIV V V+++D  +KR++L+++
Sbjct: 664 FGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR 720