Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 778 a.a., RNA-binding transcriptional accessory protein from Dickeya dianthicola ME23

 Score =  569 bits (1467), Expect = e-166
 Identities = 320/723 (44%), Positives = 459/723 (63%), Gaps = 27/723 (3%)

Query: 5   QQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLE 64
           Q +  E   +T QV   ++L+DEGNT+PFI+RYRKE TG LDD  LR+   RL+YLR LE
Sbjct: 7   QIIASELQARTEQVTAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLSYLRELE 66

Query: 65  DKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLS 124
           +++  I+K I+EQGKLT  L   I  +   TELED+Y P++PKR+TR  IA   GL+PL+
Sbjct: 67  ERRQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLA 126

Query: 125 ELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENTFS 184
           + +     + P E +A  +VN +  V  V+ A+ GA+ I+ E  +++A     +R+  + 
Sbjct: 127 DSLWNDPSQTP-ELVANAYVNADNGVADVKAALDGARYILMERFAEDAALLAKVRDYLWK 185

Query: 185 EG--IISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVEFI 242
               +  V     ++ + +  Y+++ E ++++P HR LA+ RG +E +LQ+ L+A  +F 
Sbjct: 186 NAHLVSRVVEGKEEDGAKFRDYFDHREPLSQVPSHRALAMFRGRNEGMLQLSLNADPQFD 245

Query: 243 H---DWIFKNIILENSQTSEILKDTVIDSYKRLIAP---------SIEREIRNSLTEKAE 290
               +   + II+++ +    L +   D ++R +            +E E+  S+ EKAE
Sbjct: 246 EPPKESHCEQIIVDHLRLR--LGNAPADGWRRAVVNWTWRIKVLLHLETELMGSVREKAE 303

Query: 291 NGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHN 350
           + AI VF++NL  LL+  P   +  +G DP  RTG K+A+VD TGK++    +YP     
Sbjct: 304 DEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT--G 361

Query: 351 KVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVN-DVYYVIVNEAGASV 409
           +  +    V  L IK+ +++VAIGNGTASRE+E    +  K+  +     VIV+EAGASV
Sbjct: 362 QAAKAATVVAALCIKHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIVSEAGASV 421

Query: 410 YSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSES 469
           YSASEL + EFP  DV +R A+SIARRLQDPL+ELVKIDPKSIGVGQYQHD++Q +L++ 
Sbjct: 422 YSASELAALEFPGLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQTQLAKK 481

Query: 470 LGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKL 529
           L A+VE  VN+VGVDLNTASV LL  V+G+   +A+NIV++R ENG+F +R +LLKVS+L
Sbjct: 482 LDAIVEDCVNAVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQLLKVSRL 541

Query: 530 GKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKV 589
           G KAFEQCAGFLRI  G N  D + VHPE+Y + E +L      ++D+        S  +
Sbjct: 542 GPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATEQKLQDLMGN-----SSAL 596

Query: 590 DIEKLAEKLD--CGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGT 647
              K A   D   G+PT+ DIIKELEKPGRDPR +         V  L DL  GMIL+G 
Sbjct: 597 RTLKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILEGA 656

Query: 648 VRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSL 707
           V N+ +FGAF+DIGVH DGL HIS +ADRF++ P  V+  GDIV V V+++D  +KR++L
Sbjct: 657 VTNVTNFGAFVDIGVHQDGLVHISSLADRFVEDPHQVVKAGDIVKVKVLEVDLQRKRIAL 716

Query: 708 SIK 710
           +++
Sbjct: 717 TMR 719