Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 566 a.a., 30S ribosomal protein S1 from Agrobacterium fabrum C58

 Score = 68.9 bits (167), Expect = 6e-16
 Identities = 31/83 (37%), Positives = 60/83 (72%), Gaps = 3/83 (3%)

Query: 629 RSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVG 688
           RS++++  +L+EG ++ G V+NI D+GAF+D+G   DGL H++++A R + HP +++++G
Sbjct: 188 RSEIVQ--NLEEGQVVDGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIG 244

Query: 689 DIVDVMVMDIDFDKKRVSLSIKR 711
             V V ++ I+ +  R+SL +K+
Sbjct: 245 QQVKVQIIRINQETHRISLGMKQ 267



 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDID 699
           G  + GTV NI D+GAF+++    +GL HISE++  +   HP  ++S    VDV+V+++D
Sbjct: 283 GKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVD 342

Query: 700 FDKKRVSLSIKR 711
             K+R+SL +K+
Sbjct: 343 PSKRRISLGLKQ 354



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDID 699
           G  ++G V+N  +FG FI +    DG+ H+S++  +R  +  ++  + GD+V  +V+D+D
Sbjct: 370 GTEVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVD 429

Query: 700 FDKKRVSLSIKR 711
            +K+R+SL IK+
Sbjct: 430 VEKERISLGIKQ 441