Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 774 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  595 bits (1534), Expect = e-174
 Identities = 333/725 (45%), Positives = 469/725 (64%), Gaps = 32/725 (4%)

Query: 7   LQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDK 66
           +  E N +  QV+  V L+DEG T+PFI+RYRKE TG LDD  LR   +RL YLR L  +
Sbjct: 12  IASEINARPDQVKAAVALLDEGATVPFIARYRKEVTGGLDDTQLRTLAERLVYLRELNAR 71

Query: 67  KAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSEL 126
           +A I+  I  QGK+T EL  KI ++    ELED+Y P++PKR+TRA IA  +GL PL+E 
Sbjct: 72  RASIVDSITGQGKMTDELMVKIMQAGTKAELEDLYLPYKPKRRTRAEIARERGLGPLAEA 131

Query: 127 ILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADY----RKFIRENT 182
           I +     P + LAE +V  E  V  V+ A+ GA+DI+AE +++NAD     R ++R N 
Sbjct: 132 IWENRAADPAK-LAEAYVKGE--VADVKAALEGARDIVAETMTENADLLGRLRDYMRRNA 188

Query: 183 FSEGIISVKAKNVDEKSV----YEMYYEYSEAINKIPGHRILAINRGESEKILQVKLD-- 236
                 + +AK VD K      +  Y+++SE    +PGHR LA+ RG +E++L + +D  
Sbjct: 189 ------TFRAKVVDGKQATGEKFSDYFDHSERWATVPGHRALAMLRGWNEEVLTLTIDVD 242

Query: 237 ----APVEFIHDWIFKNIILENS-QTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAEN 291
               +PV+     I     + ++    + L +    +++  ++ S+  ++   L E+AE 
Sbjct: 243 ADDPSPVKPSQRTIAAAFDIRSAGPADQWLMEVAGWTWRVKLSMSLSLDLMRELRERAEE 302

Query: 292 GAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNK 351
            AI VF++NLK LLL  P  ++  +G DP  RTG K+A+VD TGK+LD + VYP  P N 
Sbjct: 303 EAINVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPKND 362

Query: 352 VTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVY-----YVIVNEAG 406
           V  T+ ++  LI K++++++AIGNGT SRE+E +V+++L ++           VIV+EAG
Sbjct: 363 VRGTQAELASLIRKHNVELIAIGNGTGSRETEKLVADLLAQLPASASGAKPTKVIVSEAG 422

Query: 407 ASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKL 466
           ASVYSASE  + EFP  DV +R A+SIARRLQDPLAELVKI+PKSIGVGQYQHD++Q +L
Sbjct: 423 ASVYSASERAAAEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQGRL 482

Query: 467 SESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKV 526
           S SL AVVE +VN+VGVDLNTAS  LL  VSG+   IA  IVA+R + G F SRKELLKV
Sbjct: 483 SRSLDAVVEDAVNAVGVDLNTASSPLLARVSGLGSSIADAIVAHRDQTGPFASRKELLKV 542

Query: 527 SKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKIS 586
            +LG++ FEQCAGFLRIP GK   D++ VHPE+Y +A+ ++       +D++    D  +
Sbjct: 543 PRLGQRTFEQCAGFLRIPNGKEPLDSSSVHPEAYGVAKKIVAACG---RDLRSLMGDSAA 599

Query: 587 EKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKG 646
            K    K       G+PT++DII ELEKPGRDPR           V E+ DLK GM+L+G
Sbjct: 600 LKALDPKRFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADGVDEITDLKPGMLLEG 659

Query: 647 TVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVS 706
           TV N+  FGAF+DIGVH DGL H+S++ADRF+K P +V+  GD+V V V+++D  +KR+ 
Sbjct: 660 TVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRIG 719

Query: 707 LSIKR 711
           L++++
Sbjct: 720 LTMRK 724