Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 557 a.a., 30S ribosomal protein S1 from Acinetobacter radioresistens SK82

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 35/77 (45%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L  L+EG  + GT++N+ D+GAF+D+G   DGL HI+++A + IKHP +V+ VG  V V 
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVEVGQEVTVK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 245 VLKFDRERNRVSLGLKQ 261



 Score = 65.1 bits (157), Expect = 9e-15
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIK--HPLDVISVGDIVDVMVMD 697
           +G I+K  V N+ D+G F +I    +GL H+SE+ D   K  HP  V+ +GD VDVMV++
Sbjct: 276 KGSIVKARVTNLTDYGCFAEIAEGVEGLVHVSEM-DHTNKNIHPSKVVQIGDEVDVMVLE 334

Query: 698 IDFDKKRVSLSIKRAK 713
           +D +++R+SL IK+ +
Sbjct: 335 VDEERRRISLGIKQTR 350



 Score = 48.5 bits (114), Expect = 9e-10
 Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 567 LNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKP 626
           ++E++ + K+I   K+ +I ++VD+  L    +        I   +++   +P E+  K 
Sbjct: 306 VSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE-----RRRISLGIKQTRANPWEEFAK- 359

Query: 627 VLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVI 685
                     +  +G  + GT+++I DFG FI +    DGL H+S+I+ +   +  +   
Sbjct: 360 ----------NHDKGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRY 409

Query: 686 SVGDIVDVMVMDIDFDKKRVSLSIKR 711
             GD V+ +++ +D +  R+SL IK+
Sbjct: 410 KKGDTVEAVILSVDAEGNRISLGIKQ 435



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 604 TLEDIIKELEKPGRDPREDLPKPVLRSDVLE--LEDLKEGMILKGTVRNIVDFGAFIDIG 661
           T+E +I  ++  G   R  L    L SD     L   + G ++KGTV  +   GA + + 
Sbjct: 414 TVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANERGALVKGTVTAVDARGATVKLA 471

Query: 662 VHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
              +     SEI    ++     + VG  V+  ++++D   + ++LSIK
Sbjct: 472 DEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520