Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

 Score =  223 bits (568), Expect = 2e-62
 Identities = 142/501 (28%), Positives = 259/501 (51%), Gaps = 35/501 (6%)

Query: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68
           +GTK+LIFSII VL+PI++  +V+ DTI+ ++  N +  ++ ++ I ++ ++S  +EF++
Sbjct: 9   LGTKMLIFSIISVLVPILVFGFVANDTIAGILDDNAQKSINTDIKIADQIIESRFIEFES 68

Query: 69  MTAYTADLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDNAEI 128
           +  Y  +   V+ +V N D + L             D     D++GN I ++ G D  +I
Sbjct: 69  ICEYATNKADVITSVSNKDSEKLSIGVETFRAAINSDFVGVLDSNGNTIASTAGPD-IQI 127

Query: 129 SSYVKKLLEKNTIYAYDILPNEEASKYSE-YELDGND-ALTIFTVAPIYDGNSLIGTVTY 186
            S  +KL+   T  +++ +    A K ++ Y+++  D AL +    PIY+  +++G++  
Sbjct: 128 GSVAQKLITSGTKRSFEPISANTAYKINKNYKVENVDSALGMVVTYPIYENGNVVGSIII 187

Query: 187 VDIMNKDDYWVDRVKEVTGDEASIYLNNVRISTTCIKDGVDFVGELADEDIYETVSKKQD 246
           +DI+N ++  VD+VK  TGDEA+  L   RIST+ I++G   VG    ++++  V  +  
Sbjct: 188 IDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIENGKRPVGTSISDEVWTYVMSQNA 247

Query: 247 V-RSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTALLNSVIQKIFFIAFSSLI 305
           V + T  + G   +  Y+P+ + + +VIGM  VG P++   A  N    KI  +A   ++
Sbjct: 248 VYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAKNDARNKIIMLALFGIL 307

Query: 306 IAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGK 365
           IA  +    N+KI   I++LK   E FG GNYD + ++ TGDEL+EL++SFNKMA+ +  
Sbjct: 308 IAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKN 367

Query: 366 SDKKLKSDAHTL---------------KTSF----DELKEVDNLKSEILSIVSH------ 400
             K +  D   L               K  F    DE +E + L+  I + VS+      
Sbjct: 368 LMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIK 427

Query: 401 ELRTPLTAILGYVELLKD------ETAGKLSEKQKEFISVISENSDRLKRITDNMSDLVT 454
           ELR  L  +   ++ ++D      ETA +++E   +     S+ S +L+  ++ +     
Sbjct: 428 ELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYE 487

Query: 455 VDNKILDIKRDRINLKKEVND 475
              ++     + +   +E+ +
Sbjct: 488 NAKEVYSAAEETVKSSEEIKE 508



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 31/173 (17%)

Query: 320 DSIKKLKNSAESFGRGNYDERASIDTGDELEELA----ESFNKMADEIGKSDKKLKSDAH 375
           ++ K++ ++AE   + + + + + + G E  E A    +S   + DE+GKS K L  D  
Sbjct: 487 ENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDG- 545

Query: 376 TLKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGK-----------L 424
                  ++ EV  L  +I        +T L A+   +E  +   AGK           L
Sbjct: 546 ------KKINEVTGLIKDIAE------QTGLLALNASIEAARAGDAGKGFAVVASEIKAL 593

Query: 425 SEKQKEFISVISENSDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDIL 477
           +E+ K+ +  I+   D    +   + D V +  K  D     +    EVND L
Sbjct: 594 AEEIKKSVEDINHTID---GVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDAL 643



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 312 VILNKKIVDSIKKLKNSAES---------FGRGNYDERA--SIDTGDELEELAESFNKMA 360
           VI   ++ D++ K+K S             G  N  E    ++    ++  L+E F   A
Sbjct: 633 VIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATA 692

Query: 361 DEIGKSDKKLKSDAHTLKTSFDELKEVDNLKSE 393
           +E+  S ++L S    ++   +EL  V    SE
Sbjct: 693 EEVTASTEELNSIIEEIRVIAEELTHVSERVSE 725