Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

 Score =  317 bits (811), Expect = 1e-90
 Identities = 176/501 (35%), Positives = 285/501 (56%), Gaps = 37/501 (7%)

Query: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68
           IGTKLLIF I+  +IP++++  VST+ I++ M    ++ ++ NL I  E +++V+VEF+T
Sbjct: 8   IGTKLLIFMILCAIIPLMVVGGVSTNKITEEMQIQGDNSVNDNLNIFQESIENVIVEFET 67

Query: 69  MTAYTADLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDNAE- 127
            T+YTA L      + N+DK+ L DFA  ++  S +DL  FTD +GN+I +S   DN + 
Sbjct: 68  TTSYTASLDTFSELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSS---DNVQT 124

Query: 128 -ISSYVKKLLEKNTIYAYDILPNEEASKYSEYELDG-NDALTIFTVAPIYDGNSLIGTVT 185
            +   + KLL      +++I+   EASKYS+Y+++  NDAL I  VAP+Y    L+GTVT
Sbjct: 125 NLKPVISKLLSNEVQSSFEIISGSEASKYSDYKVNNINDALAICVVAPVYHSGELVGTVT 184

Query: 186 YVDIMNKDDYWVDRVKEVTGDEASIYLNNVRISTTCIKDGVDFVGELADEDIYETVSKKQ 245
            VDI+N DDYWVD +KE TG+EA+I+L NVRISTT   +G D  G    +++Y  ++  Q
Sbjct: 185 LVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTVQTNGQDATGTKCSDEVYNIITNHQ 244

Query: 246 DVRSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTALLNSVIQKIFFIAFSSLI 305
           D   T  + G  Y+ KYSPI + DG V+G+   G PK+PF A++     +I  I+   L+
Sbjct: 245 DYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLLGLL 304

Query: 306 IAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGK 365
           +++ +A+   +KI   I++LK   E FG GNYD + ++ TGDEL+EL++SFNKMA+ +  
Sbjct: 305 LSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKN 364

Query: 366 SDKKLKSDAHTLKTSF-------------------DELKEVDNLKSEILSIVSH------ 400
             K +  D   L T                     DE +E +NL+  I + VS+      
Sbjct: 365 LMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIK 424

Query: 401 ELRTPLTAILGYVELLKD------ETAGKLSEKQKEFISVISENSDRLKRITDNMSDLVT 454
           ELR  +  +   ++ ++D      ETA +++E   +     S+ S +L+  ++ + +   
Sbjct: 425 ELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYE 484

Query: 455 VDNKILDIKRDRINLKKEVND 475
              ++     + +   +E+ +
Sbjct: 485 GAKEVYSAAEETVKSSEEIKE 505



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 36/179 (20%)

Query: 320 DSIKKLKNSAESFGRGNYDERASIDTGDELEELA----ESFNKMADEIGKSDKKLKSDAH 375
           +  K++ ++AE   + + + + + +TG E  E A    +S   + DE+GKS K L  D  
Sbjct: 484 EGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDG- 542

Query: 376 TLKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGK-----------L 424
                  ++ EV  L  +I        +T L A+   +E  +   AGK           L
Sbjct: 543 ------KKINEVTGLIKDIAE------QTGLLALNASIEAARAGDAGKGFAVVASEIKSL 590

Query: 425 SEKQKEFISVISENSDRLKRITDNMSDLVTVDNKILD---IKRDRIN-----LKKEVND 475
           +E+ K+ +  I+   + + +  D+  DL       +D   I  D +N     +K+ VN+
Sbjct: 591 AEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNE 649



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 13/74 (17%), Positives = 33/74 (44%)

Query: 314 LNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGKSDKKLKSD 373
           + + + +S  K+          + +   ++    E+  L+E F   A+E+  S ++L S 
Sbjct: 643 IKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSI 702

Query: 374 AHTLKTSFDELKEV 387
              ++   +E+ +V
Sbjct: 703 IEEIRGIAEEVTQV 716