Pairwise Alignments

Query, 500 a.a., flippase from Methanococcus maripaludis S2

Subject, 483 a.a., lipopolysaccharide biosynthesis protein from Bacteroides stercoris CC31F

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 95/495 (19%), Positives = 191/495 (38%), Gaps = 57/495 (11%)

Query: 2   SYKERMIKGASWNFLFLVLAAPIGYFVRILYANSLSKVEVGLFYAILDLISMVSIFRGLG 61
           S K  ++ G  WN +    A+   +   ++ A  LS  + G    +L  IS+       G
Sbjct: 4   SLKHTVLSGMVWNAIERFGASLFLFISNLVLARLLSPDDFGCIAMLLVFISVSDAIIDGG 63

Query: 62  LNNTVIYFIPKFLVQNRKDLIKSTLISVLLIQTIMAVLMAVLMYLISPTLINKYINNQGQ 121
             + +I          +K+   +   +V     +++ ++  ++YL +P +   Y      
Sbjct: 64  FGSALI---------QKKNTTATDYSTVFYWNLLLSFILYAVLYLCAPAIAGFY------ 108

Query: 122 FGDISLIFVVFTIMIFGYYIFDGTKALLFNSFQGFQSQKIYGTCNFLNILSILI---LSI 178
             +I L+  V  +      I     AL+       + Q  +     +N+ +I+    + I
Sbjct: 109 --NIPLLDNVLKVQGIVLII----NALVLIQQNILKKQIAFKKIAKINLTAIVAGTGMGI 162

Query: 179 IFIYFGAGLYSPALAYTITPLIMILIYGKIFLKEVFPEFFTEKITFSKELLNDIFSYGM- 237
           +  + G G++S  +    T ++   IY      +  PE+      FS +    +F YG  
Sbjct: 163 LLAFLGCGIWSLVVKSLATGMVQCGIYW--LGNKWRPEW-----VFSWKSFTGLFRYGSF 215

Query: 238 --------PIMFGSAGFIIMGYLDSICLTYFTGLNAVADYRNVAMPTVLVLSYFASAICK 289
                    + + +   II     S+ L Y++  N + D    ++         +S +  
Sbjct: 216 MFLNSIANSLYYSALSLIIGRCFSSVELGYYSQANKLQDVPRNSI---------SSVVTN 266

Query: 290 VILPMSTEMWEKGEKKNLSDGLKKILSYSFIISVPFAVILAYFPTELVNIFFNENYLTAA 349
           V  P+ + + E  ++  L +   K +     I  P  ++L      LV + F + +L   
Sbjct: 267 VTFPVFSNIQE--DRAKLRNAFSKCIRSVAFIQFPIIMVLIITARPLVAVLFTDKWLPMV 324

Query: 350 PTMSILSFGVIFLSMNTIVFDIFNGIGKPHLSAKILYIGALFNLIFNLLLIPKFGTIGAA 409
           P   IL+F  +  ++  +  ++   +GK      + ++  +  L    + I +FG IG  
Sbjct: 325 PYFQILAFAGLSSTLFEVHTNVIKSLGKSREVFILEFLLRIMGLTVVAISI-RFGMIGLL 383

Query: 410 FATTLCYILIQILQTRYLGKFLDYK--FPLKNFFLCLFSSSISIVPLLIIKSMILN--EY 465
                   L  I  + Y+GK + Y   F L++     F  ++S   L+   S + +    
Sbjct: 384 AGYAFSQFLFYIAASAYVGKLIHYDICFRLRDLAPAFF-IAVSAAALVYCFSALFDAGPV 442

Query: 466 VLILFSGVLYFLTYF 480
            LIL    +YF+ YF
Sbjct: 443 YLILIQASVYFVLYF 457