Pairwise Alignments

Query, 462 a.a., V-type ATP synthase subunit B from Methanococcus maripaludis S2

Subject, 450 a.a., putative secretion system apparatus ATP synthase SsaN from Xanthobacter sp. DMC5

 Score =  127 bits (320), Expect = 6e-34
 Identities = 105/349 (30%), Positives = 166/349 (47%), Gaps = 15/349 (4%)

Query: 13  VSRIAGPLMVIDGIEG-IAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTS 71
           V  +A   + + G+   +  GE V     +G    G+V+      AVV+ F+    +   
Sbjct: 37  VREVAPTHVRVSGLSSFVTLGERVGFEQASGTS-IGEVVRIDAAGAVVKPFDERVSVGIG 95

Query: 72  ETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAE--EKLDINGYPLNPVSRNPP 129
               R  G  A +       GR+ +  G+PLD  PE +A    ++ ++  P   ++R   
Sbjct: 96  TPAFRI-GPLA-LSPDRSWKGRVIDALGRPLDK-PEPLAHGPRRMPLDSEPPPAMARGRV 152

Query: 130 NAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKVRGEGEQFAVVFAAM 189
           +  + TGV  +D    +  GQ+I IF+GSG+  + L +  AR A          VV A +
Sbjct: 153 HRPLVTGVRAVDIFTPICEGQRIGIFAGSGVGKSTLLSMFARSAGFD------TVVVALV 206

Query: 190 GITGEESNYFMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVL 249
           G  G E   F+ E     + ++AVV ++ +D   + R L P+ AL  AEY     G  VL
Sbjct: 207 GERGREVREFL-EGPLAASRDRAVVIVSTSDQSPMMRRLAPQAALAVAEYFR-NAGESVL 264

Query: 250 VILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGKEGTVTQIPIL 309
           +I+  +T Y  A R++A A  E    RGY   +++ L  L ERAG     EG +T I  +
Sbjct: 265 LIVDSVTRYAHAARDVALAAGEPAVARGYAPSVFSTLPKLLERAGPGMEGEGAITGIFSV 324

Query: 310 TMPDDDITHPIPDLTGYITEGQIVLSRELNRKGVYPPVDILPSLSRLAG 358
            +  DD   P+ D      +G IVL R +  +G +P +++L S+SRLAG
Sbjct: 325 LVDGDDHNDPVADAIRGTLDGHIVLDRAIADQGRFPAINLLGSISRLAG 373