Pairwise Alignments

Query, 586 a.a., ATP synthase subunit A from Methanococcus maripaludis S2

Subject, 470 a.a., Sodium-transporting ATPase subunit D from Sphingobium sp. HT1-2

 Score =  114 bits (284), Expect = 1e-29
 Identities = 99/316 (31%), Positives = 147/316 (46%), Gaps = 29/316 (9%)

Query: 194 RKPRPSKGKQAPVIPLITGQRVEDTFFGLAKGGASAIPGPFGSGKTVTQHQL-----AKW 248
           R P P   + A      TG +V D    LA+GG +A+ G  G GKTV   +L     A++
Sbjct: 120 RAPPPLDEQSAATAMFETGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELINAMVARY 179

Query: 249 SDVDVVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRTVLIANTSNMPVAAREASVY 308
             V V  + G GER  E  E++ +         G+ ++D+TVL+    N P  AR     
Sbjct: 180 EGVSV--FAGIGERSREGHELLTDM-------RGSGVIDKTVLVFGQMNEPPGARWRVGL 230

Query: 309 TGITIAEYFRD-QGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLSSKLAQFYE 367
           T +TIAE+FRD Q   VLL  D+  R+ +A  E+SG L  MP   GY   L+S++A   E
Sbjct: 231 TALTIAEHFRDEQKRNVLLLMDNVFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAALQE 290

Query: 368 RAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPA 427
           R   V           V  + AV  P  DF++P  +     +     L   +A    +PA
Sbjct: 291 RIASVH-------GAAVTAIEAVYVPADDFTDPAVTAISAHLDSSILLSRAMAAEGIYPA 343

Query: 428 INWLTSYSLYIDDIAGWWQQNTAADWRSLRDEAMSLLQKEAELQEIVQLVGPDALPDRER 487
           ++ L S S+ +D       Q       +L  +    +    ELQ+I+ L+G + L   +R
Sbjct: 344 VDPLGSSSILLD------PQVVGDHHYALAQQVRETIAHYRELQDIISLLGIEELGREDR 397

Query: 488 VILEIARMLREDFLQQ 503
           +I+  AR L+  FL Q
Sbjct: 398 LIVGRARRLQR-FLTQ 412



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 3  VGKIIKISGPVVVAEGMKGS--QMFEVVKVGNEG--LTGEIIQLTEDEAIIQV-YEETAG 57
          +G+I  + GPV+  E  +G    + E ++V      L  E+    +D  +  V  + T+G
Sbjct: 10 LGRIAALRGPVLDVEFDEGPLPAVNEALRVDASSGPLVAEVQSHIDDRTVRAVALQPTSG 69

Query: 58 IKPGEGVEGTGAPLSVELGPGML 80
          +    GV   GAP++V +G  +L
Sbjct: 70 LARNVGVMALGAPIAVPVGDKVL 92