Pairwise Alignments

Query, 586 a.a., ATP synthase subunit A from Methanococcus maripaludis S2

Subject, 473 a.a., flagellum-specific ATP synthase from Agrobacterium fabrum C58

 Score =  114 bits (286), Expect = 7e-30
 Identities = 97/321 (30%), Positives = 150/321 (46%), Gaps = 30/321 (9%)

Query: 198 PSKGKQAPVIPLITGQRVEDTFFGLAKGGASAIPGPFGSGKTVTQHQLAKWSDVDVVVYI 257
           PS  ++    P  TG R  D F  L  G    I    G GK+     LAK    D VV  
Sbjct: 153 PSMTRKRVETPFKTGVRAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLAKADAFDKVVIA 212

Query: 258 GCGERGNEMTEVIEEFPHLDDIKTGNKLMDRTVLIANTSNMPVAAREASVYTGITIAEYF 317
             GERG E+ E IE+        T    M ++V +  TS+     R+ +  + +TIAE+F
Sbjct: 213 LVGERGREVREFIED--------TMGDNMSKSVAVVATSDESPMLRKMAPLSAVTIAEHF 264

Query: 318 RDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLSSKLAQFYERAGRVECLGS 377
           RDQG  VLL  DS +R+A A+RE++    E P   GYPA + ++L +  ERAG     G+
Sbjct: 265 RDQGDNVLLIIDSVTRFAHAIREVAVASGEPPVARGYPASVFTELPRLLERAGP----GA 320

Query: 378 ENKQGFVCIVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLTSYSLY 437
           E   G +  + ++   G + ++P+  +T  I+     LD +LA    +P IN L S S  
Sbjct: 321 EG-TGTITAIVSILVDGDNHNDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRL 379

Query: 438 IDDIAGWWQQNTAADWRSLRDEAMSLLQKEAELQEIVQLVG---PDALPDRER------V 488
                   ++    D   L     +L+ +  E +++ +L+G   P   PD +       +
Sbjct: 380 A-------KKAWTPDQEKLVSRLKALVHRFEETRDL-RLIGGYRPGTDPDLDMAVKQVPI 431

Query: 489 ILEIARMLREDFLQQDAYHEV 509
           I E  + L ++   QDAY ++
Sbjct: 432 IYETLKQLPDEPAAQDAYADL 452