Pairwise Alignments

Query, 268 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 328 a.a., protease from Pseudomonas simiae WCS417

 Score = 63.5 bits (153), Expect = 5e-15
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 52/289 (17%)

Query: 4   WLNLLLGIFLLVLIIKSVIIVNQFELGLIFRLGKV-RGRLNPGVNFIIPF-IDVPIKVDV 61
           W  LL+   L  +   S++ V   E  +I R G   R  L PG+ +  P   +  I VD+
Sbjct: 35  WALLLV---LFAVAAASLVQVRSGEATVITRFGNPSRVLLEPGLGWRWPAPFEAAIPVDL 91

Query: 62  RTKVIDVPPQEMITRDNAGVRIDAVIYYRVM----DVNRAILEVQN----FQYAIINLAQ 113
           R +      Q++ TRD   + + A + ++V     +V R +  VQN        I     
Sbjct: 92  RLRTTSSGLQDVGTRDGLRIIVQAYVAWQVQGDADNVQRFMRAVQNQPDEAARQIRTFVG 151

Query: 114 TSLRAIIGSLELDDALNK--------------REFINSQLLETLDRDTDAWGVKVEKVEL 159
           ++L     S +L   +N               R+ I+ QLL T       +GV+V +V +
Sbjct: 152 SALETTAASFDLSSLINTDASQVRIADFEAQLRQQIDQQLLTT-------YGVRVAQVGI 204

Query: 160 REIEPPTDIKNAMTQQMKAER-----------LKRAAILEAEGEKQSKILKAQGTAESMK 208
             +  P+    A   +M+AER            + AA + +  E+ ++I++A  T ++  
Sbjct: 205 ERLTLPSVTLTATVDRMRAERETIATERTAVGKREAAQIRSAAERDARIVQADATVKAAD 264

Query: 209 IEAEGQAKAIQIVAESAQNYFKNEAQLY---KALDVTSNTLKDNTKFVI 254
           IEA+ + +A QI A +    +    QLY   ++LD     +   TK ++
Sbjct: 265 IEAQSRVEAAQIYARA----YAGNPQLYNLLRSLDTLGTVVTPGTKIIL 309