Pairwise Alignments

Query, 388 a.a., MMPL family transporter from Methanococcus maripaludis S2

Subject, 791 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 81.6 bits (200), Expect = 7e-20
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 13/239 (5%)

Query: 126 NNDVIPNDVATVKTIYQNLPESSRDGIFNNDYSMVVVYATTDAGTDDKKILVKDINSRLD 185
           N DV+ N +A    +Y N    +   +F ND+    +     A  D  K   KD      
Sbjct: 544 NPDVLNNSIARADGLYNNNCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKD------ 597

Query: 186 EAPIPPGVE-VITTGTPALSELLKRMMDESQAVTGLASLLAIFTILLLYFRNIVKSVLPL 244
                 G+E ++  G   +      ++ ES+    +   L + T+ ++ FR+   ++  +
Sbjct: 598 ------GLEFILAAGNAGIEAATNEVIKESELTILILVYLCVATMCMITFRSWAATLCIV 651

Query: 245 IPVVVAVIWAAGSMAIFKIPMDTATSVMGSLLLGLGIDYGVHLFHRYEEELGDGKSMDEA 304
           +P+V+  +     MA   I +  AT  + +L +G+G+DYG++++ R E  L  G  + EA
Sbjct: 652 LPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEA 711

Query: 305 INIAVVSTGSAVLVTTATTMAGFAALTIAPLSMMANMGKVCTLGIFFCMAAVICLLPPL 363
               + STG AVL T      G      + +   A+MG + T  + + M   + LLP L
Sbjct: 712 YYQTLKSTGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPAL 770



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 75/373 (20%), Positives = 155/373 (41%), Gaps = 36/373 (9%)

Query: 21  VVAVVIVLTIFMAFLATGIESQTDYEKMVPQDDPVIVALNEIRDEFGGT-ETIMLGVKLV 79
           V+ + ++++IF+ + AT I   T +EKM+P   P I  + E R++      T+ + V+  
Sbjct: 23  VIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRISVEAK 82

Query: 80  PSD--SSEKVTDIRDPRVLDLVDFLEQ-DIGSMDMITSVSSR-ADILKA--YNNDVIPND 133
             D  + E +  +R  ++ D V ++   D   +  + S S R  ++ +      +VIP  
Sbjct: 83  DGDIFTKEYMETLR--QINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQS 140

Query: 134 V----ATVKTIYQNLPESSRDG-IFNNDYSMVVV----YATTDAGTDDKKILVKD----- 179
                 ++  +  N+ +S + G +  ND+   +V      +     D  K+L  D     
Sbjct: 141 YNGSPESLDQLRNNVLKSGQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRKFS 200

Query: 180 ------INSRLDEAPIPPGVEVITTG-TPALSELLKRMMDESQAVTGLASLLAIFTILLL 232
                 I ++  E    P V++   G    + +L+  ++     V        I  +LLL
Sbjct: 201 HELEDKIRTKFQEQN--PNVQIHIVGFAKKVGDLIDGLI---MVVLFFGVAFGITLVLLL 255

Query: 233 YFRNIVKSVLPLIPV-VVAVIWAAGSMAIFKIPMDTATSVMGSLLLGLGIDYGVHLFHRY 291
           +F N ++S + ++   +VAV+W  G M      +D  + ++  L+  +GI +GV   +  
Sbjct: 256 WFTNCLRSTIAVLSTTLVAVVWQLGLMHAAGFGLDPYSMLVPFLIFAIGISHGVQKINGI 315

Query: 292 EEELGDGKSMDEAINIAVVSTGSAVLVTTATTMAGFAALTIAPLSMMANMGKVCTLGIFF 351
             +  +  +   A            ++       GF  L I  + ++  +    ++G+  
Sbjct: 316 ALQSSEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAV 375

Query: 352 CMAAVICLLPPLI 364
            +   + LLP  I
Sbjct: 376 IVFTNLILLPVAI 388