Pairwise Alignments

Query, 523 a.a., COG1361 S-layer family protein from Methanococcus maripaludis S2

Subject, 438 a.a., COG1361 S-layer family protein from Methanococcus maripaludis S2

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 85/321 (26%), Positives = 138/321 (42%), Gaps = 42/321 (13%)

Query: 24  LEIDEPQYNPNVIHPGDDVDVWIDVANDEGSDEIIEDLRISVESNYPFEVKQVNPTKGVY 83
           L I++   +P+    GD  D+ + + ND G+ E   D  + VE +YPFE  ++     + 
Sbjct: 37  LNINKVNQDPDPAIAGDVFDLRVSIENDGGNGE--GDFIVEVEPSYPFE--EIEGEDLIQ 92

Query: 84  EISQLNEGESDT----AYFKLRINDDASSRDYRLDVTVSYDIVEYDGDDRQVISKSYTKI 139
           +I  +N  E       A FKLR+++DA+  DY ++V      +   G+D    S  YTK 
Sbjct: 93  DIGIINGYEDGNDAIIAKFKLRVSEDATEGDYPIEVH-----IYKKGED---ASSGYTKE 144

Query: 140 YYIPVYGLANFEINSDGVTLTPAKTENVQIKVTNKGTGTAKEATLTIGS-NNLINPIDT- 197
             + V    + E++ D   L      NV   + N G+   K    +  S NN I P+ + 
Sbjct: 145 ITVTVGNEESAEVSLDADELVAGDKTNVTFTIENTGSAPIKNLEFSWESENNAILPLGSG 204

Query: 198 ---TKFYLG-SLSPDITKLLSLNLHASGDATEGSYLIPATLSWIDSDGTENSEVINI-GF 252
              T  Y+G   S D+T      + AS D   G Y +   L++ DS      EV ++ G 
Sbjct: 205 NLKTISYIGVGSSVDVT----YTVLASTDVDPGIYELTMDLTYDDSLNNTKEEVEHLAGI 260

Query: 253 IVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGHGEAKNIEIDLLSEYPFKDSWSN 312
           +V G  +  +S    D  E           + + N G  +  ++ + +    P +D+WS 
Sbjct: 261 LVLGKTDFEVSYSGEDSGE---------YTLTVMNVGKSDVNSVIVSI----PEQDAWSV 307

Query: 313 SNFKN--IGTLTSGDTKTATF 331
           S      IG L  GD   + F
Sbjct: 308 SGVSTSIIGNLDGGDYTFSNF 328



 Score = 52.4 bits (124), Expect = 3e-11
 Identities = 65/287 (22%), Positives = 110/287 (38%), Gaps = 30/287 (10%)

Query: 212 LLSLNLHASGDATEGSYLIPATLSWIDSDGTENSEVINIGFIVEGDINLG---ISNVITD 268
           +    L  S DATEG Y I   +        +  E  + G+  E  + +G    + V  D
Sbjct: 108 IAKFKLRVSEDATEGDYPIEVHIY-------KKGEDASSGYTKEITVTVGNEESAEVSLD 160

Query: 269 PTEIKAQETYVKIDVDLTNNGHGEAKNIEIDLLSEYPFKDSWSNSNFKNIGTLTSGDTKT 328
             E+ A +    +   + N G    KN+E    SE        + N K I  +  G +  
Sbjct: 161 ADELVAGDK-TNVTFTIENTGSAPIKNLEFSWESENNAILPLGSGNLKTISYIGVGSSVD 219

Query: 329 ATFYIDVDKDAEAKHYAVPLNITYMDIFDEEHSEMEYI-DLYIKPKPVLEILPETYTLKA 387
            T+ +    D +   Y + +++TY D  +    E+E++  + +  K   E+     +   
Sbjct: 220 VTYTVLASTDVDPGIYELTMDLTYDDSLNNTKEEVEHLAGILVLGKTDFEV-----SYSG 274

Query: 388 GDENTITLTLQNTGSEKAQSVKITAIKNTAQPFEYTQKTDSIGTLDTNETGEGQLIIDVD 447
            D    TLT+ N G     SV ++  +  A        T  IG LD    G      + +
Sbjct: 275 EDSGEYTLTVMNVGKSDVNSVIVSIPEQDAWSVSGV-STSIIGNLD----GGDYTFSNFE 329

Query: 448 SDAANKEYLITVEVRSVGDSEEGDDNVYISQKTIRVNVEGGSNSTLV 494
                 +  + VE+     S EGD      + TI+  VE  S +T++
Sbjct: 330 LSTTQSDSPLIVEITYT--SPEGD------RVTIQKEVEMPSETTVM 368



 Score = 48.1 bits (113), Expect = 6e-10
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 254 VEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGHGEAKNIEIDLLSEYPFKDSWSNS 313
           V+  + L I+ V  DP    A + +  + V + N+G     +  +++   YPF++     
Sbjct: 31  VDDYVILNINKVNQDPDPAIAGDVF-DLRVSIENDGGNGEGDFIVEVEPSYPFEEIEGED 89

Query: 314 NFKNIGTLTS----GDTKTATFYIDVDKDAEAKHYAVPLNITYMDIFDEEHSEMEYIDLY 369
             ++IG +       D   A F + V +DA    Y + ++I Y    D      + I + 
Sbjct: 90  LIQDIGIINGYEDGNDAIIAKFKLRVSEDATEGDYPIEVHI-YKKGEDASSGYTKEITVT 148

Query: 370 IKPKPVLEILPETYTLKAGDENTITLTLQNTGSEKAQSVKIT 411
           +  +   E+  +   L AGD+  +T T++NTGS   ++++ +
Sbjct: 149 VGNEESAEVSLDADELVAGDKTNVTFTIENTGSAPIKNLEFS 190