Pairwise Alignments

Query, 249 a.a., exodeoxyribonuclease III from Methanococcus maripaludis S2

Subject, 259 a.a., Catabolite repression control protein from Pseudomonas putida KT2440

 Score =  144 bits (364), Expect = 1e-39
 Identities = 75/254 (29%), Positives = 140/254 (55%), Gaps = 5/254 (1%)

Query: 1   MKMLSWNVNGIRACLKNGFMNFLERESPDIMCIQETKVQSGQVQ---LGLDGYFQYWNYA 57
           M+++S NVNGI+A  + G +++L+ ++ D++C+Q+T+  + ++      LDGYF Y   A
Sbjct: 1   MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA 60

Query: 58  ERKGYSGTAIFTKIKPNNVILGMENSEHNNEGRVITLEFDEYYLVNVYTPNSQRGLTRLE 117
           E     G A++++++P  VI G+     +  GR +  +FD+  + ++  P+   G   L 
Sbjct: 61  EVPAQGGVALYSRMQPKAVITGLGFETADRYGRYLQADFDKVSIASLLLPSGMNGDEDLN 120

Query: 118 YRQKWDEDFLSYI-KTLETKKPVVFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDN 176
            + K  +DF  Y+ K    ++  ++CG   VA +++D+KN + + ++ GF   ER   D 
Sbjct: 121 QKFKLMDDFAKYLDKQRRKRREYIYCGSFYVAQQKLDIKNWRDSQQSPGFLAPERAWMDA 180

Query: 177 IVNS-GFLDTFREFNNEPDNYSWWSYRFNARARNIGWRIDYFCISKSLRNNLKDAYIMPE 235
           I    G++D  RE + E D YSWW     A   N+G+R DY  ++  LR  +++A +  +
Sbjct: 181 ITGEMGYVDALREVSREGDQYSWWPDNEQAEMLNLGYRFDYQILTPGLRRFVRNARLPRQ 240

Query: 236 VMGSDHCPVGIIFE 249
              S H P+ + ++
Sbjct: 241 PRFSQHAPLIVDYD 254