Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 324 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Rhodanobacter sp000427505 FW510-R12

 Score =  129 bits (325), Expect = 7e-35
 Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 22/301 (7%)

Query: 17  AGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSVEIDYGINNI 75
           AG +    L + F + S   +  + K   + ++      +  L+  E V + ++   N +
Sbjct: 15  AGRRFDQALAEMFPDYSRSRLSGWIKSGAVTLDGAPAPPRQLLRGGERVQLRVELE-NEV 73

Query: 76  TP--ENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFV 133
               E++ L +++ED+ LL++DK   +VVHP     +GTL NA+ +H     +  +   V
Sbjct: 74  ASAAEDIALAIVHEDEHLLVLDKPAGLVVHPGAGNPAGTLLNALLHHDPRLAELPRAGIV 133

Query: 134 NRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLNEN 193
           +RLD DT+GL++VA+   ++  L   +    +E+ Y AVV G L +  G ++  I  +  
Sbjct: 134 HRLDKDTSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTL-VAGGTVDAPIGRSLG 192

Query: 194 GIKREL---SNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGNYIIGDTL 250
              R+       GK + T Y+V E  +  S+L+  L TGRTHQIRVHL+   + ++GD L
Sbjct: 193 DRLRQAVRDEEDGKRAVTHYRVRERFRAHSLLQCRLETGRTHQIRVHLAHISHPLVGDPL 252

Query: 251 YGETSKL--------------IDRQALHSHILRFIHPITKEKIEIISKLPDDMKNLIKNL 296
           YG   KL                RQALH+  L FIHP T E +   ++ P D + LI+ L
Sbjct: 253 YGGGLKLPKGASAELAAALRGFRRQALHAEQLAFIHPATGEAMSFGAERPADQQRLIETL 312

Query: 297 K 297
           +
Sbjct: 313 R 313