Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 356 a.a., Ribosomal large subunit pseudouridine synthase D from Xanthobacter sp. DMC5

 Score =  128 bits (321), Expect = 2e-34
 Identities = 86/245 (35%), Positives = 135/245 (55%), Gaps = 31/245 (12%)

Query: 78  ENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNY----KIRFV 133
           E+L L + +EDD L+++DK   +VVHP     SGTL NA+  H   +        +   V
Sbjct: 107 EDLPLTIAFEDDHLIVIDKPAGLVVHPAPGHASGTLVNALLYHCGDSLSGIGGVRRPGIV 166

Query: 134 NRLDMDTTGLLIVAKNSYSHQQLAKQMDE----GILEKIYIAVVNGHLDLKEGIIEDSID 189
           +R+D DT+GLL+VAK+  +H+ LA Q  +    G LE+ Y+A V G  + K G ++  ID
Sbjct: 167 HRIDKDTSGLLVVAKSDAAHKGLAAQFADHGRTGPLERAYLAFVWGVPEPK-GRVDAPID 225

Query: 190 LN-ENGIKRELSNFGKISKTKYKVIEEL------KNASVLEINLLTGRTHQIRVHLSSTG 242
            +  +  K  +   G+ + T ++V+E        + AS++E  L TGRTHQIRVH++  G
Sbjct: 226 RHPTHRQKMAVRGSGRHAVTHWEVLETFVGKTGAEVASLIECRLETGRTHQIRVHMAHAG 285

Query: 243 NYIIGDTLYGETSK---------------LIDRQALHSHILRFIHPITKEKIEIISKLPD 287
           + ++GD +YG+  +                + RQALH+  L F HP+T E++   S+LP 
Sbjct: 286 HPLLGDEVYGQGFRTKVSLLPDEARACLAALGRQALHAARLGFAHPVTGEELSFESELPQ 345

Query: 288 DMKNL 292
           D+  L
Sbjct: 346 DLAAL 350