Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  129 bits (325), Expect = 7e-35
 Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 22/309 (7%)

Query: 8   LNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSV 66
           L   V S++ G +L  V    F E S   +  + K+ ++ V+   I  +  +     + +
Sbjct: 7   LRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAILEL 66

Query: 67  EIDYGINNI-TPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINN 125
             +         +++ L+++YEDDD+L+++K   +VVHP      GTL NA+ +H     
Sbjct: 67  TAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDII 126

Query: 126 QNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIE 185
              +   V+RLD DTTGL++VAK   +  QL  Q+    + +IY  +V G +     I  
Sbjct: 127 NVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKI-- 184

Query: 186 DSIDLNENGIKRE---LSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTG 242
            +  +  +G +R+   +   GK + + Y+V+E  ++ + + + L TGRTHQIRVH++   
Sbjct: 185 -NAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHIN 243

Query: 243 NYIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEIISKLPDD 288
             ++GD  YG              ++ K   RQALH+  L   HP + +++   S LPDD
Sbjct: 244 FPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLPDD 303

Query: 289 MKNLIKNLK 297
           +  L+  LK
Sbjct: 304 LVWLLSLLK 312