Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score =  114 bits (284), Expect = 4e-30
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 13/223 (5%)

Query: 77  PENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRL 136
           PE + L  +YED+ L IVDK   +VVHP     SGTL N +           +   V+RL
Sbjct: 99  PETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGLLALDPKAALLPRAGIVHRL 158

Query: 137 DMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLN----- 191
           D DT+GL++VA+   +   +   +    +++ Y+A+  GH     G     +D       
Sbjct: 159 DRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAI--GHKPWV-GAAARQVDAPIGRDP 215

Query: 192 ENGIKRELSNF----GKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGNYIIG 247
            N ++  + +     GK ++T  + ++      V+   L TGRTHQIRVH++S G+ ++G
Sbjct: 216 RNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVRCTLETGRTHQIRVHMASIGHPLVG 275

Query: 248 DTLYGETSKL-IDRQALHSHILRFIHPITKEKIEIISKLPDDM 289
           D LYG    + + RQALH+  L F+HP+T+E +E  S  P D+
Sbjct: 276 DALYGGAPAVGLSRQALHAFRLAFVHPVTQEPMEFRSPPPPDL 318