Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 19/218 (8%)

Query: 82  LNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRLDMDTT 141
           L+ ++EDD LL  DK   ++  P +        +A +  Q  +        V+RLDM T+
Sbjct: 7   LHPVHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQWPD-----ALIVHRLDMGTS 61

Query: 142 GLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHL-DLKEGIIEDSIDLNENGIKRELS 200
           GL+++A+     + L+    E  + K Y AVV+G L  L E  + D+  L  +  +R L 
Sbjct: 62  GLVVMARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDA-PLMADWPRRPLQ 120

Query: 201 NF---GKISKTKYKVIEELKN------ASVLEINLLTGRTHQIRVHLSSTGNYIIGDTLY 251
                GK S T++K I           A+ + +  LTGR+HQ+RVHL S G+ I+GD LY
Sbjct: 121 KIDPAGKPSVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILGDALY 180

Query: 252 GETS--KLIDRQALHSHILRFIHPITKEKIEIISKLPD 287
           G+ +      R  LH+  L F+HP+T E++    + PD
Sbjct: 181 GDAALQARAPRLLLHASELGFVHPVTMEELR-FRRTPD 217