Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 316 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Sphingobium sp. HT1-2

 Score =  160 bits (405), Expect = 3e-44
 Identities = 103/310 (33%), Positives = 172/310 (55%), Gaps = 22/310 (7%)

Query: 7   ILNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVS 65
           I+  T+    AG +L   L +   +LS + IK    E +I    ++++   K+   +  S
Sbjct: 7   IIETTIGEAQAGLRLDRALAELLPDLSRERIKALIVEGQIVSGGRSLNPSMKVAVGQDYS 66

Query: 66  VEIDYGIN-NITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNH--QK 122
           + +   +  +   +++ L++++ED DL++VDK   +VVHP    L GTL NA+ +H   +
Sbjct: 67  ITLPAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQ 126

Query: 123 INNQNYKIR--FVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLK 180
           ++      R   V+R+D DT+GLL+VAK+  +H+ LA+Q  +  ++++Y A+V G     
Sbjct: 127 LSGIGGVARPGIVHRIDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPAPG 186

Query: 181 EGIIEDSI-----DLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIR 235
            G ++  I     D  +  + RE    GK + T Y+V+E L+ A+++E  L TGRTHQ+R
Sbjct: 187 SGTVDAWIGRSDADRKKMAVHRE--GRGKHAVTHYRVMERLRGAAMVECRLETGRTHQVR 244

Query: 236 VHLSSTGNYIIGDTLYGETSK---------LIDRQALHSHILRFIHPITKEKIEIISKLP 286
           VH++  G+ +IGD +YG   K            RQALH+  L FIHP+T+E +   S LP
Sbjct: 245 VHMAHLGHPLIGDPVYGRDRKGFKSILETLGFKRQALHAKRLGFIHPVTEEPLAFDSPLP 304

Query: 287 DDMKNLIKNL 296
            DM+ L+  L
Sbjct: 305 ADMQELLSEL 314