Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 320 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Pseudomonas putida KT2440

 Score =  139 bits (351), Expect = 6e-38
 Identities = 95/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 8   LNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSV 66
           L+  V S++ G +L  V    F E S   +  + KE ++ V+   +  +  +     +++
Sbjct: 7   LSAEVPSELGGQRLDQVAAQLFAEYSRSRLTSWIKEGRLTVDGAVVRPRDLVHGGSQLAL 66

Query: 67  EIDYGINNI-TPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINN 125
           E +         E++ L+++YEDD +L+++K   +VVHP     SGTL NA+ +H     
Sbjct: 67  EAEQEAQGEWIAEDIELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIV 126

Query: 126 QNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIE 185
              +   V+RLD DTTGL++VAK   +  +L +QM    + +IY  +V G +    G I+
Sbjct: 127 NVPRAGIVHRLDKDTTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIG-VVTAGGKID 185

Query: 186 DSIDLNENGIKREL--SNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGN 243
             I     G+++ +  ++ GK + + Y+V++  ++ + + + L TGRTHQIRVH++  G 
Sbjct: 186 APIG-RHGGMRQRMAVTDGGKPAVSHYRVLKRFRSHTHVRVKLETGRTHQIRVHMAHVGF 244

Query: 244 YIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEIISKLPDDM 289
            ++GD  YG              E  K   RQALH+  L   HPIT E ++  S LPDD 
Sbjct: 245 PLVGDQTYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDF 304

Query: 290 KNLIKNL 296
             L+  L
Sbjct: 305 VWLLSLL 311