Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 219 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Escherichia coli ECRC98

 Score = 89.7 bits (221), Expect = 5e-23
 Identities = 57/207 (27%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 77  PENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQ-----KINNQNYKIR 131
           P+   L ++Y+DD +++V+K   ++  P +          +  H+     +I     +  
Sbjct: 9   PQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYPQAE 58

Query: 132 FVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSI--D 189
            V+RLDM T+G+++VA    + ++L +Q  E + +K Y+  V GH    EG+++  +  D
Sbjct: 59  SVHRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICD 118

Query: 190 LNENGIKRELSNFGKISKTKYKVIE-ELKNASVLEINLLTGRTHQIRVHLSSTGNYIIGD 248
                 ++     GK ++T+Y+V+E    N + + +  +TGR+HQ+RVH+ + G+ I+GD
Sbjct: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178

Query: 249 TLYG--ETSKLIDRQALHSHILRFIHP 273
             Y   E   +  R  LH+ +L   HP
Sbjct: 179 RFYASPEARAMAPRLLLHAEMLTITHP 205