Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D from Escherichia fergusonii Becca

 Score =  142 bits (359), Expect = 8e-39
 Identities = 94/314 (29%), Positives = 167/314 (53%), Gaps = 23/314 (7%)

Query: 4   QKKILNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISL-KSKLKEN 61
           Q+  L  TV     G +L   L + F + S   IK++  + ++ VN K     K K+   
Sbjct: 3   QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62

Query: 62  ETVSVEIDYGIN-NITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNH 120
           E V++  +        P+++ L+++YED+D+++++K +++VVHP      GT+ NA+ ++
Sbjct: 63  EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHY 122

Query: 121 QKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLK 180
                   +   V+RLD DTTGL++VAK   +  +L + +    + + Y AV  GH+   
Sbjct: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182

Query: 181 EGIIEDSIDLNENGIKRE---LSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVH 237
            G +++ I  + +  KR    +   GK + T Y+++E  +  + L + L TGRTHQIRVH
Sbjct: 183 -GTVDEPI--SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239

Query: 238 LSSTGNYIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEIIS 283
           ++   + ++GD +YG               T +  DRQALH+ +LR  HPI+  ++E  +
Sbjct: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299

Query: 284 KLPDDMKNLIKNLK 297
            +P DM  LI+ ++
Sbjct: 300 PIPQDMVELIEVMR 313