Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Dickeya dianthicola ME23

 Score =  142 bits (359), Expect = 8e-39
 Identities = 100/312 (32%), Positives = 158/312 (50%), Gaps = 19/312 (6%)

Query: 4   QKKILNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENE 62
           Q+  L  TV     G +L   L + F + S   IK +  E ++ +N   +  K K K   
Sbjct: 3   QQVQLTATVAESQLGQRLDQALAELFPDYSRSRIKTWILEQRVQINGNMVD-KPKEKVLG 61

Query: 63  TVSVEIDYGINNIT---PENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISN 119
             SV ID  I        + ++L+++YED D+L+++K +N+VVHP      GT+ NA+ +
Sbjct: 62  GESVAIDALIEEDARWEAQPISLDIVYEDGDILVINKPRNLVVHPGAGNPDGTVLNALLH 121

Query: 120 HQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDL 179
           H        +   V+RLD DTTGL++VAK   +  +L + +    + + Y AV  G +  
Sbjct: 122 HYPEIVDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTA 181

Query: 180 KEGIIEDSIDLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLS 239
              + E     +       +   GK + T Y+++E  +  + L + L TGRTHQIRVH++
Sbjct: 182 GGTVEEPIARHSTKRTHMAVHPMGKPAVTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMA 241

Query: 240 STGNYIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEIISKL 285
              + ++GD LYG              ET +  DRQALH+ +LR  HPI+  ++E  + L
Sbjct: 242 HINHPLVGDPLYGGRPRLPKGASETFIETLRNFDRQALHATMLRLYHPISGIEMEWHAPL 301

Query: 286 PDDMKNLIKNLK 297
           P DM +LI  LK
Sbjct: 302 PQDMVDLIAALK 313