Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 319 a.a., 23S rRNA pseudouridine(955,2504,2580) synthase from Escherichia coli BL21

 Score =  110 bits (274), Expect = 5e-29
 Identities = 86/316 (27%), Positives = 159/316 (50%), Gaps = 32/316 (10%)

Query: 6   KILNLTVDSKIAGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKLKENETV 64
           KI+ +T D   AG ++ + L+   + +   MI +  ++ ++ VN K I  + KL+  + V
Sbjct: 9   KIVAITADE--AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66

Query: 65  SVE----IDYGINNITPE-----NLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLAN 115
            +      +     ++P       L   ++YEDD +L+++K     VH      SG    
Sbjct: 67  RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG----SGLSFG 122

Query: 116 AISNHQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNG 175
            I   + +  +   +  V+RLD DT+G+L+VAK   + + L +Q+ E  ++K Y+A+V G
Sbjct: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182

Query: 176 HLD-----LKEGIIEDSIDLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLTGR 230
                   ++  ++++ +   E  ++  +S  GK S+T++KV E    A+++  + +TGR
Sbjct: 183 QWQSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240

Query: 231 THQIRVHLSSTGNYIIGDTLYG---------ETSKLIDRQALHSHILRFIHPITKEKIEI 281
           THQIRVH    G+ I  D  YG         E    ++R  LH+  L+F HP T E + I
Sbjct: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300

Query: 282 ISKLPDDMKNLIKNLK 297
            + + + +K  ++ L+
Sbjct: 301 EAPMDEGLKRCLQKLR 316