Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score =  135 bits (339), Expect = 2e-36
 Identities = 96/304 (31%), Positives = 161/304 (52%), Gaps = 36/304 (11%)

Query: 30  ELSNKMIKKFDKENKIFVNSKNISL-KSKLKENETVSVEIDYGINNITP-ENLTLNVIYE 87
           +LS   +K   ++  + +N + ++  K K+   + V + +    + +   E++ L+V YE
Sbjct: 36  DLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDVEYE 95

Query: 88  DDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNY----KIRFVNRLDMDTTGL 143
           D+DL+++ K   +VVHP     +GTL NA+  H   +        +   V+RLD +T+G+
Sbjct: 96  DEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKETSGV 155

Query: 144 LIVAKNSYSHQQLAKQMDE----GILEKIYIAVVNGHLDLKEGIIEDSI----DLNENGI 195
           ++VAKN  +H+ LA Q  +    G LE+ Y AVV G      G ++ ++    D  +  +
Sbjct: 156 MVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGTDRTKRAV 215

Query: 196 KRELSNFGKISKTKYKVIEELKN-------ASVLEINLLTGRTHQIRVHLSSTGNYIIGD 248
           K E S   + + T Y+V+E           AS++E  L TGRTHQIRVH++  G+ +IGD
Sbjct: 216 KNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGHPLIGD 275

Query: 249 TLYGET----SKLID-----------RQALHSHILRFIHPITKEKIEIISKLPDDMKNLI 293
             YG      + L+D           RQALH+++L F HP T E +E  + +P+DM+ L+
Sbjct: 276 PEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPEDMEELV 335

Query: 294 KNLK 297
             L+
Sbjct: 336 TALR 339