Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 221 a.a., Dual-specificity RNA pseudouridine synthase RluA from Acinetobacter radioresistens SK82

 Score = 99.4 bits (246), Expect = 7e-26
 Identities = 65/216 (30%), Positives = 119/216 (55%), Gaps = 12/216 (5%)

Query: 77  PENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRL 136
           P    L++IYEDDDL+I+DK   ++  P +        +  S + ++  +    +  +RL
Sbjct: 11  PPQQPLSIIYEDDDLIIIDKPAGLLSVPGR-----LPEHQDSAYLRLLEKYPHAKITHRL 65

Query: 137 DMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLNENGIK 196
           DM T+G+L+ AK+  +   ++K      + K Y+A++ G L+ ++G I+  +  +     
Sbjct: 66  DMATSGILMFAKHRDAEVAISKMFQARTVTKRYVALIQGQLN-EQGSIDVPLITDWENRP 124

Query: 197 RELSNF--GKISKTKYKVIEELKNASVLEINL--LTGRTHQIRVHLSSTGNYIIGDTLYG 252
           R++ +F  GK +KT ++V++  +   +  + L  +TGR+HQ+RVH+   G+ I+GD LY 
Sbjct: 125 RQIVHFELGKSAKTLFQVLQYHEEHDMTRVLLTPITGRSHQLRVHMQYIGHPIMGDKLYH 184

Query: 253 ET--SKLIDRQALHSHILRFIHPITKEKIEIISKLP 286
                  + R ALH+  L F  P++K+ IEI   +P
Sbjct: 185 PEPGGFYLRRMALHASYLAFQQPLSKDLIEINMAIP 220