Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 350 a.a., Ribosomal large subunit pseudouridine synthase D from Acinetobacter radioresistens SK82

 Score =  168 bits (426), Expect = 1e-46
 Identities = 103/284 (36%), Positives = 166/284 (58%), Gaps = 17/284 (5%)

Query: 30  ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSVEIDYGINNIT-PENLTLNVIYED 88
           E S + +K++ K+  + VN  N+  K K + NE +++E +  I   + PEN+ L++IYED
Sbjct: 62  EFSREKLKQWIKDGHLLVNGNNVKPKYKCEGNELLTLEAELEIQTASQPENIPLDIIYED 121

Query: 89  DDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRLDMDTTGLLIVAK 148
           DD+++++K+  MVVHP     SGTL NA+  H   +N+  +   V+R+D DT+GLL+VAK
Sbjct: 122 DDIIVINKTVGMVVHPGAGNGSGTLVNALLYHYPKSNELARAGLVHRIDKDTSGLLVVAK 181

Query: 149 NSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLNE-NGIKRELSNFGKISK 207
           N  +   L+KQ+ +  + +IY  VV G++ +  G I++ I  +  + +K  +   GK + 
Sbjct: 182 NLEAQFSLSKQLAKKTVYRIYDLVVYGNI-VAGGTIDEPIKRHPVDRVKMAILPGGKEAV 240

Query: 208 TKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGNYIIGDTLY--------GETSKLID 259
           T Y V E  K+ + ++  L TGRTHQIRVH S  G  ++GD +Y        G + +L D
Sbjct: 241 THYNVKERFKDFTRVQAQLETGRTHQIRVHFSYIGYGLVGDPVYMSRVRVPAGASEELAD 300

Query: 260 ------RQALHSHILRFIHPITKEKIEIISKLPDDMKNLIKNLK 297
                 RQALH+  L  +HP T E +   +  P+D K+LI+ L+
Sbjct: 301 TLRSFKRQALHAAKLGLVHPRTGENMMFEAPWPEDFKHLIEVLR 344