Pairwise Alignments

Query, 267 a.a., 16S ribosomal RNA methyltransferase A from Methanococcus maripaludis S2

Subject, 292 a.a., Ribosomal RNA small subunit methyltransferase A from Xanthobacter sp. DMC5

 Score =  107 bits (267), Expect = 3e-28
 Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 13/220 (5%)

Query: 5   KKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKI-AKKVYVIELDERL 63
           K LGQ FL D N   +    +    +  V+EVG G G LT+ L  + AK+V  IE D R 
Sbjct: 23  KSLGQNFLLDLNLTGRIARASGPLEDVTVVEVGPGPGGLTRALLALGAKRVIAIERDRRC 82

Query: 64  KPFADEITAEFEN-VEIIWSDALKVDLKNL---GFNKIVANLPYQISSPITFKFLEED-- 117
                E+ A +   +E+I  DALKVD++ L   G  ++VANLPY I++ +   +L  D  
Sbjct: 83  MDALAEVAAHYPGRLEVIEGDALKVDVRPLIGEGEARVVANLPYNIATVLLVGWLSTDPW 142

Query: 118 ---FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNS 174
              F +  LM+Q E A+R+  +P +K Y RL+V   +         V PSAF P P V S
Sbjct: 143 PPWFSSLTLMFQKEVAERIVAEPGSKAYGRLAVLAGWRTKGRIAFDVAPSAFVPPPKVTS 202

Query: 175 AIVKLTKR-EPKYHVKDEEFFKKVLKAVFQHRNRTIKRAL 213
           +++ L  R EP          +KV ++ F  R + ++++L
Sbjct: 203 SVIHLVPRAEPLPCALSA--LEKVTESAFGQRRKMLRQSL 240