Pairwise Alignments

Query, 267 a.a., 16S ribosomal RNA methyltransferase A from Methanococcus maripaludis S2

Subject, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

 Score =  126 bits (317), Expect = 4e-34
 Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 10/226 (4%)

Query: 2   RQSKKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKIAKKVYVIELDE 61
           R  K+ GQ FL D   + + +        + +LE+G G+GALT+ L     ++ V+ELD+
Sbjct: 8   RARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDK 67

Query: 62  RLKPFADEITAEFENVEIIWSDALKVDLKNLGFN----KIVANLPYQISSPITFKFLEED 117
            L P      A+  N  +   DALK D   LG      K+V NLPY IS+P+ F  L   
Sbjct: 68  DLVPILQHKFADRSNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSHA 127

Query: 118 --FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSA 175
                   M Q E  +RMA  P   ++ RLS+ VQY+  VE +  V P AF+P P V+SA
Sbjct: 128 GLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187

Query: 176 IVKLTKREP-KYHVKDEEFFKKVLKAVFQHRNRTIK---RALIDSS 217
           IV+L   E   +  KD    ++V++  F  R +T++   + L+DS+
Sbjct: 188 IVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSA 233