Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 351 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 57.4 bits (137), Expect = 4e-13
 Identities = 46/229 (20%), Positives = 110/229 (48%), Gaps = 15/229 (6%)

Query: 70  LCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVL 129
           +CS    PVA  M  +  ++G  ++F ++   + P  ++    +LG+    ++++A +VL
Sbjct: 125 MCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVL 184

Query: 130 ACSLGIIFYN----DKIPF----YFEEYDVKAEETFL----KVLFKQMKNLMPAIMIGFL 177
              + ++       D++P        E  V   + FL    + L++   + +P  ++  L
Sbjct: 185 VVGVSLVAQRISRPDQVPEPALEAMAEVSVVESQPFLSRWLRTLWQLFWSTIPVYILAVL 244

Query: 178 ISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNAMIPLISSVAINGVPKGLIL 237
           I G    ++   +   A++N+++     ++      +   A IP++ ++   G+  G  +
Sbjct: 245 ILGAARVWLFPHVD-GAMTNSLVWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTGPAV 303

Query: 238 SFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGII-GILVDILL 285
           + L++ PS+ LP +  + K +  ++ L  V G+ +L G++ G++  +LL
Sbjct: 304 ALLMTLPSVSLPSLLMLRKDFDARV-LATVAGLTMLVGVVCGLIGAVLL 351



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 17  FFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHI---LDNSKKSIIIASLIGAVLPLCSA 73
           F+S   VYIL   ++ A  +V L       F H+   + NS   ++  +++G +  + +A
Sbjct: 232 FWSTIPVYILAVLILGA-ARVWL-------FPHVDGAMTNSLVWLVPLAIVGTLFVIPTA 283

Query: 74  SGIPVANVMNSKGTNLGTTMSFIVSASSIT-PLGVMLTYSLLGYEIAVMQILASLV-LAC 131
           + IP+   M + G   G  ++ +++  S++ P  +ML        +A +  L  LV + C
Sbjct: 284 AEIPIVQTMMALGMGTGPAVALLMTLPSVSLPSLLMLRKDFDARVLATVAGLTMLVGVVC 343

Query: 132 SL 133
            L
Sbjct: 344 GL 345