Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 346 a.a., putative inner membrane permease from Escherichia coli BL21

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 54/283 (19%), Positives = 127/283 (44%), Gaps = 25/283 (8%)

Query: 10  SLEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSK-KSIIIASLIGAVL 68
           +L++++ +F   +   + G ++ + I+V +    R   +  L  S+ +  ++ +L     
Sbjct: 66  ALDYAMIYFLAVWKAAVLGVILGSLIQVLIP---RDWLLRTLGQSRFRGTLLGTLFSLPG 122

Query: 69  PLCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLV 128
            +C+    PVA  M  +  ++G  ++F +    + P  ++    +LG+  A ++++A LV
Sbjct: 123 MMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLV 182

Query: 129 LACSLGIIFYN-------DKIPFYFEEYDV-KAEETFL----KVLFKQMKNLMPAIMIGF 176
           +   +  +           + P    E D+ +A+  F     + L+    + +P  ++  
Sbjct: 183 MVLLIATLVQKWVRETPQTQAPV---EIDIPEAQSGFFSRWGRALWTLFWSTIPVYILAV 239

Query: 177 LISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNAMIPLISSVAINGVPKGLI 236
           L+ G    ++       A+ N++M     +VA     +   A IP++ ++ + G+     
Sbjct: 240 LVLGAARVWLFPHAD-GAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPA 298

Query: 237 LSFLISAPSIGLPMISAMLKVYGKKI-----ALKYVFGVIILG 274
           L+ L++ P++ LP +  + K +  K      A+  V GVI+ G
Sbjct: 299 LALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGG 341