Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 344 a.a., putative permease from Alteromonas macleodii MIT1002

 Score = 49.7 bits (117), Expect = 9e-11
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 8   FISLEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAV 67
           F+++E S+ F     + +L G L       K++  L         + K+   +A+ +GA+
Sbjct: 14  FLAIELSVLFIG---ISLLVGVLQRHIPPSKVEALLTS-------SGKRGYFLAAGLGAI 63

Query: 68  LPLCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASL 127
            P CS S IP+   +       G  M F+ S+  + P+ V L  +  G+ +  + +LA+L
Sbjct: 64  TPFCSCSTIPMLKGLIRARAGFGPMMVFLFSSPLLNPIVVGLLVATFGWTLTAIYVLAAL 123

Query: 128 VLACSLGIIFY 138
           V+A   G + +
Sbjct: 124 VVAVGAGWLLH 134



 Score = 43.1 bits (100), Expect = 9e-09
 Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 167 NLMPAIMIGFLISGFMMYFIPKDII-LYALSNNIMMYFYASVARIFIFLCPNAMIPLISS 225
           +++P ++IG  I   +  F+P D++  YA  +N      A+V  + +++   A+IPL ++
Sbjct: 225 DVLPYLLIGIAIGSVIYGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEAVIPLAAA 284

Query: 226 VAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIG 278
           +   GV  G +L+ +I +    L  +  +  ++  K+   ++  +  +  I G
Sbjct: 285 LMAKGVGAGTVLALIIGSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAG 337



 Score = 36.2 bits (82), Expect = 1e-06
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 18  FSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSASGIP 77
           F +   Y+L G  + + I   +   L +++     ++  +I +A++IG  L + + + IP
Sbjct: 223 FIDVLPYLLIGIAIGSVIYGFMPTDLLEQYAG--PDNPFAIPVAAVIGVPLYIRAEAVIP 280

Query: 78  VANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLACSLGIIF 137
           +A  + +KG   GT ++ I+ ++  +   ++L  SL   ++    +     +A   G   
Sbjct: 281 LAAALMAKGVGAGTVLALIIGSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAGYAT 340

Query: 138 Y 138
           Y
Sbjct: 341 Y 341



 Score = 30.4 bits (67), Expect = 6e-05
 Identities = 22/113 (19%), Positives = 45/113 (39%)

Query: 172 IMIGFLISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNAMIPLISSVAINGV 231
           I I  L+     +  P  +     S+    YF A+        C  + IP++  +     
Sbjct: 24  IGISLLVGVLQRHIPPSKVEALLTSSGKRGYFLAAGLGAITPFCSCSTIPMLKGLIRARA 83

Query: 232 PKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILVDIL 284
             G ++ FL S+P +   ++  ++  +G  +   YV   +++    G L+  L
Sbjct: 84  GFGPMMVFLFSSPLLNPIVVGLLVATFGWTLTAIYVLAALVVAVGAGWLLHTL 136