Pairwise Alignments

Query, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

Subject, 551 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Variovorax sp. SCN45

 Score =  110 bits (274), Expect = 2e-28
 Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 25/318 (7%)

Query: 250 ETKYDGARVQVHKSNGDVKIYSRRLENITNSVPELVEEIKKLDIDNIILEGECVAMDLDS 309
           E K+DG R Q+ K  G   ++SR  E +T   PEL    + L  D  +L+GE +A+  D 
Sbjct: 242 EWKWDGIRAQLVKRAGVAWVWSRGEELVTERFPELAALGEALP-DGTVLDGE-IAVWRD- 298

Query: 310 GKPRPFQDILRRFRRKYNIDKMAEKIALRIYFFDVLYYN-RGLIDTPLKTRREILEKLFG 368
           GK +PF ++ +R  RK    K+   I + +  +D+L +  + L   P   RR +L++L  
Sbjct: 299 GKVQPFAELQKRIGRKTLGAKLLRDIPVVLLAYDLLEWEGQDLRALPQSRRRVLLDELVA 358

Query: 369 TNNWDSELEKIKKEIFSSKMLFSSFKLNSGDPNLVKEFFNWSLSIGHEGIMIKNPDAPYT 428
                S              L  S  L   D   +      + ++G EG+M+K  DA Y 
Sbjct: 359 RMRHPS--------------LLPSPMLEGADWTDLATQREAARTMGVEGMMLKRRDAQYG 404

Query: 429 PGSR--VKTMYKVKPTLENLDVVVTRAKIGMGKRKDWYGSYELSVKDN-----DGNLHVI 481
            G    V   +K K    ++D V+  A+ G G+R   +  Y  +V D+     D  L   
Sbjct: 405 VGRTKDVGVWWKWKIDPLSIDAVLIYAQRGHGRRASLFSDYTFAVWDSPPGQEDRKLVPF 464

Query: 482 GNVGSGLTEDDLEKLTKIVNEIKIEDLGEEVILEPKIVLEVTYEEIQTSEKYEMGYALRF 541
               SGLT+ ++ ++  I+ +  +E  G    ++P +V E+ +E I  S +++ G A+RF
Sbjct: 465 AKAYSGLTDAEMARVDAIIRKTTVESFGPVKSVKPTLVFELGFEGIARSTRHKSGIAVRF 524

Query: 542 PRVVQIREDKSINDINTL 559
           PR+++ REDK + + +TL
Sbjct: 525 PRMLRWREDKPVEEADTL 542