Pairwise Alignments

Query, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

Subject, 837 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 84/315 (26%), Positives = 127/315 (40%), Gaps = 45/315 (14%)

Query: 224 RPIKPMLAQLTPSIEDAMIETKMPQFETKYDGARVQVHKSNGDVKIYSRRLENITNSVPE 283
           R IKP LA L   +++  +  +    E KYDG R  V  S   +KIY+R   + T+    
Sbjct: 236 RFIKPQLATL---VDNVPVGNEW-MHEIKYDGYRALVAVSGEAIKIYTRSGLDWTDKFSP 291

Query: 284 LVEEIKKLDIDNIILEGECVAMDLDSGKP--RPFQDILRRFRRKYNIDKMAEKIALRIYF 341
           L   IK LD+   +++GE +A D D G P     Q +L+R       D          + 
Sbjct: 292 LAGAIKALDLPPALIDGEIIAFDAD-GNPSFSALQAVLKRGHGAERAD-----TPFHFFA 345

Query: 342 FDVLYYN-RGLIDTPLKTRREILEKLFGTNNWDSELEKIKKEIFSSKMLFSSFKLNSGDP 400
           FD+L  +   L   P   R+E LE L      D+E            +  +   + SG+ 
Sbjct: 346 FDLLSLDGMDLKSLPAIERKERLEALLA----DAE----------QPIHVADHLIGSGE- 390

Query: 401 NLVKEFFNWSLSIGHEGIMIKNPDAPYTPGSRVKTMYKVKPTLENLDVVVTRAKIGMGKR 460
               + +      G EGI+ K  DAPY  G R +   KVK T     V+V   +    K 
Sbjct: 391 ----KLYRSLCQAGQEGIIAKRVDAPYRSG-RTRAWVKVKCTRRQEFVIVGWTR---SKA 442

Query: 461 KDWYGSYELSVKDNDGNLHVIGNVGSGLTEDDLEKLTKIVNE---------IKIEDLGEE 511
           K    S  L  +     L   G VG+G     +  L + +           I   +  + 
Sbjct: 443 KGRAFSSLLLGQHEGSELVYKGKVGTGFDAATMTDLAEAMGPISTGTPQVIISAREARDV 502

Query: 512 VILEPKIVLEVTYEE 526
             +EP++V EV++ E
Sbjct: 503 QWVEPRLVAEVSFAE 517